search for: flcore

...g some trouble when compiling R packages using R 2.6.0 and the new Rtools installer under Windows XP. (1) First, compiling any package using the new setup stops with an errorrelated to some "/" issue on the inst folder. This folder only contains a CITATION file ---------- Making package FLCore ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making FLCoreClasses.d from FLCoreClasses.cpp g++-sjlj -Ic:/progra~1/r/r-2.6.0/include -Wall -O2 -c FLCoreClasses.cpp -o FLCoreClasses.o windres --preprocessor="gcc-sjlj -E -xc -DRC_IN...

Hello, One of our packages contains C++ code that needs to be compiled against 2 other packages. So the LinkingTo field in DESCRIPTION looks like this LinkingTo: FLCore,FLash Both packages are also in the Depends field. In R 2.6.2, first thing we noticed was that both names could not have any space between them, althoguh the example in the html version of "Writing R Extensions" does have one: "A package that wishes to make use of header files in...

Hi, I'm trying to develop an histogram method for a class called "FLQuant" which is used by the package FLCore (http://flr-project.org). FLQuant is an extension to "array". There is an as.data.frame method that coerces flquant into a data.frame suitable for lattice plotting. The problem is that when I coerce the object and plot it after it works but if the method is applied within the histogram me...

Hi, I'm trying to develop an histogram method for a class called "FLQuant" which is used by the package FLCore (http://flr-project.org). FLQuant is an extension to "array". There is an as.data.frame method that coerces flquant into a data.frame suitable for lattice plotting. The problem is that when I coerce the object and plot it after it works but if the method is applied within the histogram me...

Hi, I'm writing some functions to generate Rd files for a S4 package. I want to have 2 character vectors with the names of the S4 classes and the methods exported by a package. To get the info about methods I'm using "getGenerics(where="package:FLCore")" however I can not find a similar process to get the S4 classes. Are there functions to access this information ? Best and thanks EJ

Hi, I'm writing methods for a package called FLCore (see http://flr-project.org/) in particular for a class called "FLQuant" which extends array. Previously I was able to write methods based on the class of "data" but now I can not do it due to the single parameter "x". Is there a way to do this ? Regards EJ

...on: Warning message: number of rows of result is not a multiple of vector length (arg 2) in: cbind(1, res0, Repository = repos) Has there been any change to this function, or the way repositories should be organised, that I have missed in the NEWS file? For example, a package file called FLCore_1.0.7.tar.gz is located in http://flr-project/R/src/contrib/ and the relevant entry in the PCAKGEs file looks like this: Package: FLCore Version: 1.0.7 Depends: R (>=2.2.0), methods, graphics, stats, lattice but install.packages from R 2.2.0 is not getting to it. In contrast, The FLCore_1.0.3...

...as.data.frame.table which had an extra argument (at the request of users), but required that the method had to be called explicitly to use. Adding as.data.frame.ftable compounded that problem. Packages that have S4 methods for as.data.frame still work *unless* they set an explicit generic (as FLCore does). The other motivation was to allow the option to not convert character vectors to factors, which needed an additional argument to as.data.frame.character. So data.frame now has an argument 'charToFactor' controlled by a global option (which also controls the default of as.is in...

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

...quot;FactoMineR","Fahrmeir","far","faraway","fastICA","fBasics","fCalendar","fda","fdim","femmeR","fExtremes","fgac","fields","filehash","financial","FLCore","FLEDA","flexclust","flexmix","fMultivar","fOptions","foreign"," FortranCallsR","fortunes","forward") TEMP <- c(TEMP,"fpc","fPortfolio","fracdiff","frailtypack&quo...