Displaying 1 result from an estimated 1 matches for "fituni".
Did you mean:
fini
2012 May 04
0
LIMMA decideTests result zero from contrast matrix
...r(samples)
> design <- model.matrix(~ 0+ fl)
> colnames(design) <- levels(fl)
> fit <- lmFit(eset, design)
> cont.matrix <- makeContrasts(DMSO10-Un, DMSO5-Un, levels=design)
> fit2 <- contrasts.fit(fit, cont.matrix)
> fit2 <- eBayes(fit2)
> tTUni<- topTable(fitUni, adjust="fdr", sort.by="B", number=numGenes)
> results <- decideTests(fit2)
> vennDiagram(results,include=c("up","down"),counts.col=c("red","green"))
## ### I get zero genes for upregulation and downregulation #####
Senior Resea...