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firma
2007 Jul 30
0
problems in limma
...arning messages:
1: Too much damping - convergence tolerance not achievable in:
glmgam.fit(dx, dy, start = start, tol = tol, maxit = maxit, trace = trace)
2: Too much damping - convergence tolerance not achievable in:
glmgam.fit(dx, dy, start = start, tol = tol, maxit = maxit, trace = trace)
> fitMA.pi<-lmFit(MA.p[i,],design,ndups=2,correlation=corMA.pi$consensus.correlation)
contrast.matrix<-makeContrasts(plain,plateau-PLATEAU,PLATEAU,levels=design)
contrast.matrix
Contrasts
Levels plain plateau - PLATEAU PLATEAU
plain 1 0 0
plateau 0...