search for: findorcopyclass

...sed = "OptionalCharacter")) In other words, setIs("Graph", "dgCMatrix", ...) implies setIs("Graph", "CsparseMatrix", ...), which needs to update the definition of CsparseMatrix in some environment. In the current version of SeuratObject, methods:::.findOrCopyClass() succeeds in finding the class to update in the _imports_ of SeuratObject because the relevant classes are now imported [3]: findClass('CsparseMatrix', loadNamespace('SeuratObject')) # [[1]] # <environment: 0x560676e863c8> # attr(,"name") # [1] "imports:Seurat...

Hi I am seeking to understand why the methods package (to be specific `methods:::.findOrCopyClass` when called by `setIs` when called by `setClass`) emits a warning message such as ` class "SpatialLinesNULL" is defined (with package slot 'rgeos') but no metadata object found to revise subclass information---not exported? Making a copy in package 'minweSpatialNULL `...

...cter")) > > In other words, setIs("Graph", "dgCMatrix", ...) implies setIs("Graph", > "CsparseMatrix", ...), which needs to update the definition of > CsparseMatrix in some environment. In the current version of > SeuratObject, methods:::.findOrCopyClass() succeeds in finding the > class to update in the _imports_ of SeuratObject because the relevant > classes are now imported [3]: > > findClass('CsparseMatrix', loadNamespace('SeuratObject')) > # [[1]] > # <environment: 0x560676e863c8> > # attr(,"nam...

...package that could fix the problem. > > John > > > > On Mar 12, 2015, at 1:47 PM, Geoff Lee <geoff.lee99 at gmail.com> wrote: > >> Hi >> >> >> >> I am seeking to understand why the methods package (to be specific >> `methods:::.findOrCopyClass` when called by `setIs` when called by >> `setClass`) emits a warning message such as >> >> >> >> ` class "SpatialLinesNULL" is defined (with package slot 'rgeos') but no >> metadata object found to revise subclass information---not exported?...

...true that the warning is not being seen by the owner of the package that could fix the problem. John On Mar 12, 2015, at 1:47 PM, Geoff Lee <geoff.lee99 at gmail.com> wrote: > Hi > > > > I am seeking to understand why the methods package (to be specific > `methods:::.findOrCopyClass` when called by `setIs` when called by > `setClass`) emits a warning message such as > > > > ` class "SpatialLinesNULL" is defined (with package slot 'rgeos') but no > metadata object found to revise subclass information---not exported? Making > a copy in...

...quot;SimpleSequenceType#SchemaCollection" would also be valid Error in paste(" .elementFormQualified", .elementFormQualified, sep = " = ") : no slot of name "elementFormQualified" for this object of class "SchemaTypes" In addition: Warning message: In .findOrCopyClass(class2, classDef2, where, "subclass") : Class "VirtualXMLSchemaClass" is defined (with package slot "XMLSchema") but no metadata object found to revise subclass information---not exported? Making a copy in package ".GlobalEnv" I am not an expert in web se...

...package that could fix the problem. > > John > > > > On Mar 12, 2015, at 1:47 PM, Geoff Lee <geoff.lee99 at gmail.com> wrote: > >> Hi >> >> >> >> I am seeking to understand why the methods package (to be specific >> `methods:::.findOrCopyClass` when called by `setIs` when called by >> `setClass`) emits a warning message such as >> >> >> >> ` class "SpatialLinesNULL" is defined (with package slot 'rgeos') but >> no metadata object found to revise subclass information---not >&gt...