Displaying 9 results from an estimated 9 matches for "find_vignette_product".
2013 Apr 12
2
"Failed to locate the 'texi2pdf' output file"
Hi,
Every day a few Bioconductor packages (different ones each day) fail
to build, on Windows only, with an error like this:
D:\biocbld\bbs-2.13-bioc\meat>D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD
build --keep-empty-dirs --no-resave-data OrganismDbi
[...]
Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
Failed to locate the 'texi2pdf' output file (by engine
'utils::Sweave') for vignette with name 'OrganismDbi'. The following
files exists in directory '.': 'OrganismDbi.Rnw', 'OrganismDbi.tex',
'...
2013 Mar 13
1
Failed to locate 'weave' output file / vignette product does not have a known filename extension
...hunter.html
Warning: running command
'"C:\PROGRA?2\MIKTEX?1.9\miktex\bin\texi2dvi.exe" --quiet --pdf
"bumphunter.tex" -I
"E:/biocbld/bbs-2.12-bioc/R/share/texmf/tex/latex" -I
"E:/biocbld/bbs-2.12-bioc/R/share/texmf/bibtex/bst"' had status 1
Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
Failed to locate the 'texi2pdf' output file (by engine
'utils::Sweave') for vignette with name 'bumphunter'. The following
files exists in directory '.': 'bumphunter-clusterplot.pdf',
'bumphunter-plotS...
2013 Oct 08
1
"Failed to locate the 'texi2pdf' output file"
...fferent ones each day) fail
>>> to build, on Windows only, with an error like this:
>>>
>>> D:\biocbld\bbs-2.13-bioc\meat>D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD
>>> build --keep-empty-dirs --no-resave-data OrganismDbi
>>> [...]
>>> Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
>>> Failed to locate the 'texi2pdf' output file (by engine
>>> 'utils::Sweave') for vignette with name 'OrganismDbi'. The following
>>> files exists in directory '.': 'OrganismDbi.Rn...
2016 Aug 24
1
feature request for non-sweave vignettes
...ine? Having the pandoc pdf conversion in a Makefile rather
than through R would be tidier in some cases.
If I specify my vignette engine as
```
tools::vignetteEngine(
'myengine',
pattern = '\\.[Rr](md|nw)$',
output = c('md', 'tex'),
...
)
```
the `tools:::find_vignette_product` function could have
`if (final) c("pdf", "html") else unique(c("pdf", "html", "tex",
engine$output))`
that's probably the only line that would need changing.
p
Patrick Brown
Department of Statistical Sciences, University of Toronto
Analytic...
2014 Nov 02
1
package vignettes build in the same R process?
...ette reflects packages used in earlier vignettes).
I believe the relevant code is at
src/library/tools/R/Vignettes.R:505
output <- tryCatch({
## FIXME: run this in a separate process
engine$weave(file, quiet = quiet)
setwd(startdir)
find_vignette_product(name, by = "weave", engine = engine)
}, error = function(e) {
stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)), domain = NA, call. = FALSE)
})
Is building of each vignette...
2017 Dec 06
2
FW: R-devel error
...coding = enc)
> 13: doTryCatch(return(expr), name, parentenv, handler)
> 14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 15: tryCatchList(expr, classes, parentenv, handlers)
> 16: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
> 17: tools::buildVignettes(dir = ".", tangle = TRUE)...
2017 Dec 05
2
FW: R-devel error
I am resubmitting this bug report but with additional information. I am running this with windows 10: w64-mingw32 with R Under development (unstable) (2017-12-04 r73829). I build 'httk' from the command prompt using 'R CMD build httk' after installing the required packages. Then when the vignettes are being created, it crashes. Today I installed the latest versions of Rtools,
2017 Dec 06
0
FW: R-devel error
...(file, quiet = quiet, encoding = enc)
13: doTryCatch(return(expr), name, parentenv, handler)
14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
15: tryCatchList(expr, classes, parentenv, handlers)
16: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
17: tools::buildVignettes(dir = ".", tangle = TRUE)
An i...
2017 Dec 06
0
FW: R-devel error
...13: doTryCatch(return(expr), name, parentenv, handler)
>> 14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
>> 15: tryCatchList(expr, classes, parentenv, handlers)
>> 16: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc)
>> setwd(startdir) find_vignette_product(name, by = "weave", engine =
>> engine)}, error = function(e) { stop(gettextf("processing vignette '%s'
>> failed with diagnostics:\n%s", file, conditionMessage(e)), domain =
>> NA, call. = FALSE)})
>> 17: tools::buildVignettes(dir =...