Displaying 5 results from an estimated 5 matches for "files_to_test".
2011 Aug 01
2
Errors, driving me nuts
...on
rows 'compareA' and 'compareB' (these will change over time there I
want a variable here). Also these files are in many different
directories so I want a way filter out the junk... Anyway I don't
believe that this is related to my errors but I mention it none the
less.
> files_to_test <- list.files (pattern = "kegg.combine")
> for (i in 1:length (files_to_test)) {
+ raw_data <- read.table (files_to_test[i], header=TRUE, sep=" ")
+ tmpA <- raw_data[,compareA]
+ tmpB <- raw_data[,compareB]
+ tt <- t.test (tmpA, tmpB, var.equal=TRUE...
2011 Aug 03
2
Error message for MCC
...ky/ttest_results/"
>
> ###############################
> ## Define Columns To Compare ##
> compareA <- "log_b_rich"
> compareB <- "Fc_cdt_rich_tot"
>
> ################################
> ## Collect Files To Compare ##
> setwd(load_from)
> files_to_test <- list.files(pattern = "combine.kegg")
>
> ##########################
> ## Initialize Variables ##
> vl <- length(files_to_test)
> temp <- vector(mode="numeric", length = vl)
> colA <- vector(mode="numeric", length = vl)
> colB <- v...
2011 Aug 05
2
Which is more efficient?
...k ], var.equal=TRUE)
-------------
I have three loops, i, j, k.
One to test the all of <i> files in a directory. One to tease out
column <j> and compare it by means of t-test to column <k> in each of
the files.
---------------
for ( i in 1:num_files ) {
temp <- read.table ( files_to_test [ i ], header=TRUE, sep="\t")
num_cols <- ncol ( temp )
## Define Columns To Compare ##
for ( j in 2 : num_cols ) {
for ( k in 3 : num_cols ) {
## t-test ##
colA <- temp [ , j ]
colB <- temp [ , k ]
ttr <- t.test ( colA, c...
2006 Dec 21
7
rspec_autotest no longer re-runs tests with rspec 0.7.5
Has anyone else encountered this problem?
What I mean is, rspec_autotest runs all specs, then waits. When you
change a spec, it reruns that spec. However, if that spec now passes,
it should run the whole suite again, so you can see the next one to
work on. It no longer does this. This renders it somewhat useless.
Does anyone have autotest working with rspec 0.7.5, or does anyone
have any
2008 Jul 03
0
Error on Autotest start
...d a problem. I went back to 3.5.0 and
it worked. I stayed there until moving to rails 2.1. I again updated my gems
and got 3.10. This one had the same problem. This time I need to figure out
what is wrong. Here is what I get:
/Library/Ruby/Gems/1.8/gems/ZenTest-3.10.0/lib/autotest.rb:394:in
`find_files_to_test'': undefined method `values'' for #<Array:0x18b2530>
(NoMethodError)
from
/Library/Ruby/Gems/1.8/gems/ZenTest-3.10.0/lib/autotest.rb:239:in
`run_tests''
from
/Library/Ruby/Gems/1.8/gems/ZenTest-3.10.0/lib/autotest.rb:228:in
`get_to_green''...