Displaying 2 results from an estimated 2 matches for "file_dump".
2011 May 18
1
PAM Clustering Ignores Cluster Number Parameter
...I couldn't find any discussion about this in the help file, or mailing lists.
Is there a reasonable explanation for this result ?
cIDs <- pam(all, 10, cluster.only = TRUE, do.swap = FALSE)
> table(cIDs)
cIDs
0
16671
The matrix of observations can be found at : http://129.94.136.7/file_dump/dario/all.obj
I'm using R version 2.13.0 (2011-04-13) on Platform: x86_64-unknown-linux-gnu (64-bit) and have cluster_1.13.3.
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Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
2011 Jan 27
3
agnes clustering and NAs
...-values in the dissimilarity matrix.
I've also tried getting rid of rows with all NAs in them, and it still gave me the same error. Is this a bug in agnes() ? It doesn't seem to fulfil the claim made by its documentation.
The matrix I'm using can be obtained here :
http://129.94.136.7/file_dump/dario/iMatrix.obj
--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia