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...ate the APSP (all pair shortest path) matrix only for these 500 nodes. I would appreciate any help. Thanks in advance Dinesh -- Dinesh Kumar Barupal Research Associate Metabolomics Fiehn Lab UCD Genome Center 451 East Health Science Drive GBSF Builidng University of California DAVIS 95616 http://fiehnlab.ucdavis.edu/staff/kumar [[alternative HTML version deleted]]

...matrix into this format X Y Z A 1 B 2 C 3 Thanks in advance for your help. Dinesh -- Dinesh Kumar Barupal Junior Specialist Metabolomics Fiehn Lab UCD Genome Center 451 East Health Science Drive GBSF Builidng University of California DAVIS 95616 http://fiehnlab.ucdavis.edu/staff/kumar [[alternative HTML version deleted]]

...sed, then how to get the output in which First raw present the variable name. It will be great help for my research. Dinesh -- Dinesh Kumar Barupal Research Associate Metabolomics Fiehn Lab UCD Genome Center 451 East Health Science Drive GBSF Builidng University of California DAVIS 95616 http://fiehnlab.ucdavis.edu/staff/kumar [[alternative HTML version deleted]]

.... .. e E 9 I want only the pair which pass a threshold for example >3. Please help me. Dinesh -- Dinesh Kumar Barupal Research Associate Metabolomics Fiehn Lab UCD Genome Center 451 East Health Science Drive GBSF Builidng University of California DAVIS 95616 http://fiehnlab.ucdavis.edu/staff/kumar [[alternative HTML version deleted]]

...names. 5951 236 6306 5950 145742 1123 I would appreciate if you can use this matrix as input. Thanks in advance. Dinesh -- Dinesh Kumar Barupal Research Associate Metabolomics Fiehn Lab UCD Genome Center 451 East Health Science Drive GBSF Builidng University of California DAVIS 95616 http://fiehnlab.ucdavis.edu/staff/kumar [[alternative HTML version deleted]]