search for: fastq

Displaying 9 results from an estimated 9 matches for "fastq".

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2010 Nov 04
4
how to work with long vectors
...13 Contig79:4 14 Contig79:5 17 Contig79:6 20 Contig79:7 25 Contig79:8 27 Contig79:9 32 Contig79:10 33 Contig79:11 34 matt<-read.table("/house/groupdirs/genetic_analysis/mjblow/ILLUMINA_ONLY_MICROBIAL_GENOME_ASSEMBLY/4083340/STANDARD_LIBRARY/GWZW.994.5.1129.trim_69.fastq.19621832.sub.sorted.bam.clone.depth", sep="\t", skip=0, header=F,fill=T) # dim(matt) [1] 3384766 2 matt_plot<-function(matt, outputfile) { names(matt)<-c("id","reads") cover<-matt$reads #calculate the cumulative coverage. + cover_per<-functi...
2004 Feb 22
0
Network_access_denied and no group in domain
...:name_to_sid(299) name_to_sid [rpc] ntadmin for domain DOM [2004/02/22 00:49:59, 1] nsswitch/winbindd_group.c:winbindd_getgrnam(283) group ntadmin in domain DOM does not exist ****************************************** > -----Original Message----- > From: Aaron Collins [mailto:hellfire@fastq.com] > Sent: February 21, 2004 7:40 PM > To: 'Bill Ing' > Subject: RE: [Samba] samba 3.0 and freebsd 5.1 > > > Actually, I wrote the fix for this area, I then submitted my > code and it's part of the samba 3.0.1 and higher. If you > follow my howto and are still...
2004 Feb 27
4
[OT] Fyodor terminates SCO nmap rights -- how about Samba?
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 As you all may know Fyodor of nmap fame has terminated SCO's rights to distribute namp with its products. See: http://www.smh.com.au/articles/2004/02/27/1077676955381.html I know this is off-topic, but I am interested in opinions on the subject of SCO using Samba in it's products while they declare the GPL is unconstitutional and invalid.
2010 Sep 14
4
Error: cannot allocate vector of size X.0 Mb
Hi, I am working with a file (900MB in size) that has around 10 million records (in particular FASTQ records). I am able to read in the file as an object of BStringSet. When I start to manipulate the data, after almost 4 hours, I get the error message as Error: cannot allocate vector of size X.0 Mb (where X was once 160MB and then 180MB). The R version used is 2.11.1. I am not sure how to check i...
2004 Feb 19
3
wbinfo error
We have setup Samba3 and joined the server to the AD domain. problem is when I run wbinfo -u I get the error msg "Error looking up users". If I use the syntax "wbinfo -a domain+user%password -g, it rec msgs back that the passwd succeeded but still does not let me list groups.
2003 Nov 20
1
samba 3.0.0 freebsd
Has anyone at all gotten the Samab 3.0 to integrate into the FreeBSD 5.1 Name Service switcher? Are there patches avaliable? Does anyone know where to get the FreeBSD nss api so I can try to fix the code my self? I keep getting the following errors in my logs NSSWITCH(nss_method_lookup): winbind, passwd, getpwnam_r, not found
2003 Nov 13
2
file permissions on home directories and admin user copying files to it
We want to copy files with the group in the admin list of the [homes] share. The problem is that the copied files then are owned by root. I know this is normal unix behavior. However we want the copied files to be owned by the user of the homeshare. I read the samba howto section "Users Cannot Write to a Public Share". Although I want to set the owner on the home shares and not on a
2003 Nov 13
0
samba 3.0 and freebsd 5.1
I've been working on getting freebsd 5.1 to be a member of and active directory domain. I have everything up and running fine, but I'm running in to a brick wall when trying to get nsswitch to use the libnss_winbind.so I understand that nss is new in BSD, but I am told it is supposed to work. Has anyone here got it to work right yet? I have samba, winbind and kerberos working fine. I
2004 Feb 09
0
net ads join
Hey, I'm trying to use the net ads join to connect to a win2k AD, but when I auth, it just returns a new line. It never says anything about being succesful. I've checked and I'm not part of the domain. I'm using FreeBSD 5.1, with samba 3.0.1. Can anyone recommend some suggestions. I've upgraded my kerberos to newer versions, and I know the password auth info is ok. ANy