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extrema_c
2011 Feb 11
1
Help optimizing EMD::extrema()
...what sizes to set as the default pre-allocation length. Below
I include code that demonstrates the speedup I achieved by eliminating
calls to rbind(), and also demonstrates that only a few calls to c()
seem to be responsible for most of the compute time. The files
"extrema_c.R" and "extrema_c2.R" are available at:
https://gist.github.com/822691
Any suggestions/help would be greatly appreciated.
#load the EMD library for the default version of extrema
library(EMD)
#some data to process
values = rnorm(1e4)
#profile the default version of extrema
Rprof(tmp <- tempfile())
temp =...