Displaying 4 results from an estimated 4 matches for "externalvector".
2010 Aug 25
1
Documenting S4 Methods
I'm in the process of converting some S3 methods to S4 methods.
I have this function :
setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")})
setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) {
... ... ...
})
2004 Aug 23
3
idea for "virtual matrix/array" class
I've been wondering how to work with more data than can fit in memory, in a
way that allows it to be worked with conveniently and quickly. Of course,
a database can be used for this purpose, but extracting data from a
database is much slower and somewhat less convenient than extracting data
from a native object (at least in our setup).
One idea I was thinking about was to have a new
2003 Oct 30
0
Release of Bioconductor 1.3
...enes and clustering
(edd, genefilter, geneplotter, multtest, ROC, limma)
* analysis of Affymetrix expression array data (affy, affycomp,
gcrma)
* diagnostic plots and normalization for cDNA array data (marrayInput,
marrayNorm, marrayPlots)
* storage and retrieval of large datasets (rhdf5, externalVector,
Rdbi, RdbiPgSQL).
* facilitate user interaction (tkWidgets, widgetTools)
There are currently a total of 48 packages, not including precomputed
annotation data packages for Affymetrix GeneChips(tm), KEGG, GO,
and LocusLink mappings.
-- HELP AND RESOURCES:
The packages and more details may b...
2003 Oct 30
0
Release of Bioconductor 1.3
...enes and clustering
(edd, genefilter, geneplotter, multtest, ROC, limma)
* analysis of Affymetrix expression array data (affy, affycomp,
gcrma)
* diagnostic plots and normalization for cDNA array data (marrayInput,
marrayNorm, marrayPlots)
* storage and retrieval of large datasets (rhdf5, externalVector,
Rdbi, RdbiPgSQL).
* facilitate user interaction (tkWidgets, widgetTools)
There are currently a total of 48 packages, not including precomputed
annotation data packages for Affymetrix GeneChips(tm), KEGG, GO,
and LocusLink mappings.
-- HELP AND RESOURCES:
The packages and more details may b...