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...heck fails on Cygwin (default-acls) Product: rsync Version: 3.0.0 Platform: x86 OS/Version: Other Status: NEW Severity: normal Priority: P3 Component: core AssignedTo: wayned@samba.org ReportedBy: Denis.Excoffier@airbus.com QAContact: rsync-qa@samba.org On cygwin, using only the additional "--wish-rsh=rsh" parameter to ./configure, "make check" passes all the tests (some are skipped) except for "default-acls". This is a copy of test.log: -------------- Testing for...

Hello, I am trying to run some AMOVA analyses with the amova function in the package ade4. When running the example dataset provided in ade4, I noticed a difference between the published results from the same data (Excoffier et al. 1992) and what ade4 calculates. Below are the data for "within sample/population" from ade4 and from the haplotypic distance matrix in the paper: source name Variance % total variance p-value phi ade4 within samples 0.478 75.390 1.000 0.246 paper within populations 0.478 75.3...

Dear all, I am trying to create a consensus skyline plot using the "ape" package(newbie). I have a nexus file that looks like the one from above containing many trees. (my_file.trees) #NEXUS begin trees; [Treefile generated by sim_coal.exe (Laurent Excoffier)] tree true_tree_1 = [&U] (((13.1:6, 43.1:5):12, 28.1:14):284, (((((21.1:0, (20.1:1, 4.1:0):0):1, ((37.1:0, (23.1:0, 29.1:0):0):0, 15.1:0):3):7, (36.1:3, (40.1:0, 26.1:1):2):1):2, ((16.1:0, 33.1:0):3, (10.1:0, 18.1:0):2):8):46, ((((6.1:1, (11.1:0, 34.1:0):0):2, 2.1:1):19, (((38.1:4, (35.1:4,...

The ade4 package (v. 1.2-1) has been updated on CRAN. New features include: - functions based on Rao's axiomatization of diversity measures : Rao's diversity coefficient and dissimilarity coefficient (divc and disc) - functions based on Excoffier et al. analysis of molecular variance with tests of the difference among the factors (amova). - functions introducing double principal coordinate analysis (dpcoa). - genet class and related functions to analyse genetic data (tables with populations in rows and alleles/loci in columns). - kdist...

The ade4 package (v. 1.2-1) has been updated on CRAN. New features include: - functions based on Rao's axiomatization of diversity measures : Rao's diversity coefficient and dissimilarity coefficient (divc and disc) - functions based on Excoffier et al. analysis of molecular variance with tests of the difference among the factors (amova). - functions introducing double principal coordinate analysis (dpcoa). - genet class and related functions to analyse genetic data (tables with populations in rows and alleles/loci in columns). - kdist...