search for: epurdom

Full_Name: Elizabeth Purdom Version: 1.9.1 OS: Windows XP Submission from: (NULL) (171.64.102.199) It would be nice if legend had the option of some default locations you could choose instead of entering specific coordinates, like "topleft", "topright","topcenter", etc. based on par("usr") coordinates. I know I've wanted it so often I've made my

...bitops_1.0-4.1 Biobase_2.5.8 biomaRt_2.1.0 projectManager_1.0 lattice_0.17-26 RColorBrewer_1.0-2 [9] XML_2.6-0 loaded via a namespace (and not attached): [1] grid_2.10.0 tools_2.10.0 -- Elizabeth Purdom Assistant Professor Department of Statistics UC, Berkeley Evans Hall, Rm 433 epurdom at stat.berkeley.edu (510) 642-6154 (office) (510) 642-7892 (fax)

...all available packages from CRAN and Bioconductor is now provided in $PACKAGE$/gregmisc/tools/ - space() can now space points along the 'y' dimension. - Fix an error in the permutations code for repeats.allow=T and r>2. Both the bug report and fix are from Elizabeth Purdom <epurdom at stanford.edu>. - Various fixes for compatibility with R 1.9.X. See the NEWS and ChangeLog files in the .tar.gz file for additional details. -Greg Gregory R. Warnes Manager, Non-Clinical Statistics Pfizer Global Research and Development LEGAL NOTICE\ Unless expressly stated otherwise, t...

...all available packages from CRAN and Bioconductor is now provided in $PACKAGE$/gregmisc/tools/ - space() can now space points along the 'y' dimension. - Fix an error in the permutations code for repeats.allow=T and r>2. Both the bug report and fix are from Elizabeth Purdom <epurdom at stanford.edu>. - Various fixes for compatibility with R 1.9.X. See the NEWS and ChangeLog files in the .tar.gz file for additional details. -Greg Gregory R. Warnes Manager, Non-Clinical Statistics Pfizer Global Research and Development LEGAL NOTICE\ Unless expressly stated otherwise, t...

Hi, I am trying to use two contributed packages, both of which have a function 'getNames'. So if I load them both they obviously conflict. Currently I manually detach one package and then reload the other to be able to use one function right after another. Is there anything else I can do? Best, Elizabeth

Hi, When I go to the CRAN page to download a new version of R, there are not the same versions available depending on which mirror I pick. When I go to http://cran.cnr.berkeley.edu/, for example, I get 2.2.1, but if I go http://cran.stat.ucla.edu/ the option is 2.2.0 (I'm downloading the Windows base file). Neither refreshing nor clearing my cache changes it. For future reference, I'd

Hi, This is not a bug, but a simple enhancement suggestion: that axis( ) also allow option "col" to take a vector of colors equal to the length of "labels". Currently it allows it, in the sense that there is no error message, but the function will use just the first element of the vector. Example > plot(1:5,exp(1:5),axes=F,type="o") >

Hi, This is not a bug, but an enhancement suggestion. "strwidth" only gives the width of the text according to the x-axis user coordinates, and similarly for "strheight". Even if the par setting "srt" is changed to rotate the text, the resulting width (resp. height) is in terms of the non-rotated text. Currently, if I want to know how much space to leave for

Full_Name: Elizabeth Purdom Version: 1.9.1 OS: Windows Submission from: (NULL) (171.64.102.192) hist() fails if encounters 'Inf' value, rather than giving warning and removing. Other graphics, like plot(), don't have this problem. It's actually rather confusing if you are taking the log of data real valued data with a few non-positive numbers. hist() works fine in this situation

Full_Name: Elizabeth Purdom Version: 1.9.1 OS: Windows XP Submission from: (NULL) (171.64.102.199) It would be great if heatmap and/or image had the option of printing a legend bar on it somewhere that would indicate the ranges given by the colors in the heatmap (i.e. a very small image rectangle with the same colors as in the heatmap). Because heatmap is using layout, it seems pretty

Hello, I came across the following behavior, which seems illogical to me. I don't know if it is a bug or if I'm missing something: > all(logical(0)) [1] TRUE > any(logical(0)) [1] FALSE > isTRUE(logical(0)) [1] FALSE This actually came up in practice when I did something like > all( names(x) %in% vec ) as an error-handling, and I was hoping that it would work regardless

...s?\n <anonymous>: no visible binding for global variable ?.tabulateReads?\n" -- ------------- Elizabeth Purdom Assistant Professor Department of Statistics UC, Berkeley Office: 433 Evans Hall (510) 642-6154 (office) (510) 642-7892 (fax) Mailing: 367 Evans Hall Berkeley, CA 94720-3860 epurdom at stat.berkeley.edu

Full_Name: Elizabeth Purdom Version: 1.9.1 OS: Windows XP Submission from: (NULL) (171.64.102.199) It would be nice if names(obj) would give slot names as well. Since for many people slots are new, the first thing that happens is you try to access what's in them and can't find how to do it. If you don't know that slotNames() exists, it can be very frustrating. Moreover, if you

Hi, I am trying to run a batch command on Windows XP and R CMD is not recognized. I get the error, "'R' is not recognized as an internal or external command, operable program or batch file." I have "C:\Program Files\R\rw2010\bin" in my $PATH variable and Rcmd.exe has been installed in that folder. I have restarted the computer to make sure any changes in the $PATH

Hello, I am running some commands in batch on a server that I SSH into; some of the commands call jpeg(). If I continue to stay signed on (with my xwindows working on my machine) then the jpeg() command works (with a single caveat, below). If I leave it and sign off (with a nohup command in front of my BATCH) then jpeg gives me an error like this: Error in X11(paste("jpeg::",

Hi, I use sapply very frequently, but I have recently noticed a behavior of sapply which I don't understand and have never seen before. Basically, sapply returns what looks like a matrix, says it a matrix, and appears to let me do matrix things (like transpose). But it is also a list and behaves like a list when I subset it, not a vector (so I can't sort a row for instance). I

...e with connecting to oracle via R. I have been trying to use ROracle but its giving me a lot of trouble because of pro*c. Thanks&Regards Siddharth Sent on my BlackBerry? from Vodafone ------------------------------ Message: 135 Date: Thu, 14 Oct 2010 00:41:51 -0700 From: Elizabeth Purdom <epurdom at stat.berkeley.edu> To: dennis.wegener at iais.fraunhofer.de Cc: r-help at R-project.org Subject: [R] GridR error Message-ID: <4CB6B43F.1000109 at stat.berkeley.edu> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Hi, I am trying to use 'GridR' package for the first...

Hi, I have a student who's R seems to be unable to connect to the internet. I have verified that her computer has internet access that's working fine, but that R is not able to establish connections. For example, she cannot download packages for R from the URL site, cannot source webpages, or read.table from a webpage (all of these give errors of not being able to establish a

Hi, I have done something (added an unstable package, probably) that has made my help.search function not work. I was wondering if anyone could give me trouble-shooting advice to locate the problem so I don't need to reinstall everything from scratch. I'm in Windows XP, R-2.6.0. The error code is below. Thanks, Elizabeth > help.search("latex") Error in

Hi, This is a question regarding the RWinEdt package for R. I have WinEdt 5.5, RWinEdt 1.7-9, and R 2.6.0 on WindowsXP. Somehow my configuration or start up files between RWinEdt and WinEdt are getting confused. Usually when I open either one, the last files I was working on *with that program* are opened automatically. So if I last used mydoc.tex in WinEdt and myprogram.R in RWinEdt those