search for: epigenomics

...? I checked ?INSTALL and the referenced R-admin sec. 'Configuration variables' but still am not clear on this. Regards, Matthias R version 2.9.0 Under development (unstable) (2009-03-02 r48041) on Ubuntu 8.04, 8.10 -- Matthias Burger Project Manager/ Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-0 fax:+49-30-24345-555 http://www.epigenomics.com matthias.burger at epigenomics.com -- Epigenomics AG Berlin Amtsgericht Charlottenburg HRB 75861 Vorstand:...

...I have to talk to the author of the live backup system. It would be handy to have an option like rsync --ignore-deleted-files Maildir/ that specifies directories under which files can be deleted while rsync runs. Greetings -- Robert Sander Senior Manager Information Systems Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-330 fax:+49-30-24345-555 http://www.epigenomics.com robert.sander@epigenomics.com

..."graphics" "grDevices" "datasets" "utils" "methods" [7] "base" other attached packages: rcompletion rcompgen "0.1-2" "0.1-5" -- Matthias Burger Project Manager/ Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-371 fax:+49-30-24345-555 http://www.epigenomics.com matthias.burger at epigenomics.com -- Epigenomics AG Berlin Amtsgericht Charlottenburg HRB 75861 Vorstand: Geert Nygaard (CE...

..."graphics" "grDevices" "datasets" "utils" "methods" [7] "base" other attached packages: rcompletion rcompgen "0.1-2" "0.1-10" -- Matthias Burger Project Manager/ Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-371 fax:+49-30-24345-555 http://www.epigenomics.com matthias.burger at epigenomics.com -- Epigenomics AG Berlin Amtsgericht Charlottenburg HRB 75861 Vorstand: Geert Nygaard (CE...

...ld be to changed to e.g. if (isBaseNamespace(ns)) ls(envir=baseenv(), all = TRUE) Observed with R 2.5.0 & R 2.6.0 devel (2007-05-12 r41546) (one has to go back to R 2.3.1 to see it working) Regards, Matthias -- Matthias Burger Project Manager/ Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-371 fax:+49-30-24345-555 http://www.epigenomics.com matthias.burger at epigenomics.com -- Epigenomics AG Berlin Amtsgericht Charlottenburg HRB 75861 Vorstand: Geert Nygaard (CE...

...ile name but dropped the date stamp, i.e. R-devel_.tar.bz2 Same for R-patched snapshots. Could one of the maintainers please take a look. We rely on the default naming convention for automatic builds. Regards, Matthias -- Matthias Burger Project Manager/ Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-0 fax:+49-30-24345-555 http://www.epigenomics.com matthias.burger at epigenomics.com -- Epigenomics AG Berlin Amtsgericht Charlottenburg HRB 75861 Vorstand:...

...?INSTALL tells me of a workaround via --unsafe or --no-lock but I would prefer to use the default incantation. Any insights what the cause could be? Regards, Matthias R version 2.9.0 RC (2009-04-10 r48321) on Ubuntu hardy -- Matthias Burger Project Manager/ Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-0 fax:+49-30-24345-555 http://www.epigenomics.com matthias.burger at epigenomics.com -- Epigenomics AG Berlin Amtsgericht Charlottenburg HRB 75861 Vorstand:...

...d dispatch? Please, can you point me to the relevant documentation? Reading ?setMethod, ?Methods, I failed to find an answer. Thank you. Best. Thomas Tried on R 2.3.1 and R 2.4.0-devel (2006-08-29 r39012): same result. -- Thomas Koenig Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-376 fax:+49-30-24345-555 http://www.epigenomics.com thomas.koenig at epigenomics.com

There appears to be a bug in RUnit. Given a testsuite testsuite.math, say, when I run: runTestSuite(testsuite.math) this works fine, provided there are no extraneous files in the unit test subdirectory. But if there are any Emacs temp files (with names that end with '~') then runTestSuite gets confused and tries to run functions from the temp files as well. [[alternative HTML version

...b: driver: passwd userdb: driver: passwd socket: type: listen client: path: /var/run/dovecot/auth-client mode: 432 master: path: /var/run/dovecot/auth-master mode: 384 Greetings -- Robert Sander Senior Manager Information Systems Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-0 fax:+49-30-24345-555 http://www.epigenomics.com robert.sander at epigenomics.com

...: yes passdb: driver: passwd userdb: driver: passwd Homedirectories are on NFS, /var/cache/dovecot is a local filesystem. Clients are mostly Thunderbird, where max connection to IMAP server is set to 5. Greetings -- Robert Sander Senior Manager Information Systems Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-0 fax:+49-30-24345-555 http://www.epigenomics.com robert.sander at epigenomics.com

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I was wondering if anyone could point me in the right direction for reading up on writing tests in R. I'm writing some functions for inclusion into a package and would like to test them to ensure they're doing what I expect them to do. Are these approaches used for testing packages in CRAN? Cheers, Nathan - -- -

....9.1 and R 2.1.0 devel: 2005-02-07 > version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 2 minor 0.1 year 2004 month 11 day 15 language R -- Matthias Burger Project Manager/ Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-371 fax:+49-30-24345-555 http://www.epigenomics.com matthias.burger at epigenomics.com

I'm working on the next version of coxme, one step of which is converting the bdsmatrix library from Splus to R. Actually, it is a conversion from S4 methods as first described in the Green book to S4 methods as they currently exist. Mostly it's going ok, but not entirely. 1. The biggest issue is lack of documentation. The online help pages have not been a help; they keep saying

...rfaces supported: X11, gnome, tcltk External libraries: readline, BLAS(ATLAS), LAPACK(generic) Additional capabilities: PNG, JPEG, bzip2, PCRE Options enabled: shared library, R profiling Recommended packages: no -- Matthias Burger Bioinformatics R&D Epigenomics AG www.epigenomics.com Kleine Pr?sidentenstra?e 1 fax: +49-30-24345-555 10178 Berlin Germany phone: +49-30-24345-0

Hi (especially Wayne), ftp.gwdg.de is rsyncing most of the data from about 500 other rsync servers. Especially during the general "high traffic" phases like the release of a new Knoppix ISO or a new SUSE distribution or a new KDE release, I see timeouts with other servers which have maximum traffic at that time. There is a general scheme: 1. rsync is building the data base of the

Hi friends, Please help me with this bug. *Bug in my code:* In this variable sub_grp_whr_cls_data[sbgrp_no,1] I store the where clause.every sub group has a where condition linked with it. Database1 Where clause was not found for a particular subgroup, sub_grp_whr_cls_data[sbgrp_no,1] value was NULL So the condition (*sub_grp_whr_cls_data[sbgrp_no,1]=="NULL" ||

Having used JUnit and PyUnit, I was pleased to see the release of the RUnit package on CRAN. I'm wondering if there are any RUnit users out there that would be willing to share some tips on how they organize their code to work with RUnit. Specifically, I'm wondering about the best way to load/import/source the functions to be tested. I would like to end up with a script, testall or some

...failure? Regards, Matthias >version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 2 minor 0.0 year 2004 month 10 day 04 language R -- Matthias Burger Project Manager/ Biostatistician Epigenomics AG Kleine Praesidentenstr. 1 10178 Berlin, Germany phone:+49-30-24345-371 fax:+49-30-24345-555 http://www.epigenomics.com matthias.burger@epigenomics.com

I'm a database noob, and it really seems like it would be overkill for my setup: I just want to proxy all connections from my DMZ to my internal mail server -- same internal server for all users. I used to use perdition for this set up, but am having issues getting it to play nicely with my new servers. Can I bypass all of the SQL stuff and just have dovecot forward all POP/IMAP