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Hi, I'm using the rsept for WINDOWS 95 (with modified men?, and "fixed" survival4). See the Ennapadam Venkatraman's example made in date 35/07/97 19.02 Ennapadam Venkatraman wrote: > library(splines) > library(survival4) > xx <- NULL > xx$ftim <- exp(-runif(100)) > xx$ctim <- 2*runif(100) > xx$sts <- 1*(xx$ftim <= xx$ctim) > xx$otim <- xx$sts*xx$ftim + (1...

The new code seems to have broken various things. Autoloading of libraries doesn't seem to work: > library(survival4) Autoloading required library: splines Error in pos.to.env(pos) : invalid "pos" argument > search() [1] ".GlobalEnv" "library:survival4" "library:date" [4] "library:base" The coxph function the

The new code seems to have broken various things. Autoloading of libraries doesn't seem to work: > library(survival4) Autoloading required library: splines Error in pos.to.env(pos) : invalid "pos" argument > search() [1] ".GlobalEnv" "library:survival4" "library:date" [4] "library:base" The coxph function the

I reported bugs in "rhyper" and the TASKS.OLD file claims that they have been fixed. But R continues to get stuck (the prompt never comes back) if I use rhyper with N1, N2, n large, for example "rhyper(5,200,250,60)". E. S. Venkatraman (venkat at biosta.mskcc.org) =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= r-help mailing list -- Read

I installed the latest version of R (Version 0.50 Alpha-4) and it breaks survival4 as follows (it worked fine under Version 0.50 Alpha-3) R> library(survival4) Autoloading required library: splines R> survfit(Surv(runif(25),rbinom(25,1,0.4)) ~ 1) Error in eval(frame, data)[subset, , drop = FALSE] : incorrect number of dimensions Thanks E. S. Venkatraman

Is this a feature/bug or am I missing something: R : Copyright 1999, The R Development Core Team Version 0.63.2 (January 12, 1999) ...... > ls() character(0) > x <- NULL > x$x1 <- rnorm(10) > x$x2 <- rnorm(10) > mode(x) [1] "pairlist" > as.data.frame(x) Error: can't coerce pairlist into a

I have a function that generates data and tries to apply the survfit within it. I have tried: function(..){ x ..... survfit(Surv(tim,sts) ~ grp, data = x, envir = sys.frame(sys.parent())) } but I still get "Error: Object "x" not found". Is there a fix? (I use R-0.63.2 with the current survival4 package) Thanks E. S. Venkatraman

A cut and paste typo has crept in and is rendering all values returned for the hypergeometric distribution incorrect. The problem is in src/main/arithmetic.c in the function "math4". The lines PROTECT(sy = allocVector(REALSXP, n)); a = REAL(sa); b = REAL(sb); c = REAL(sc); d = REAL(sc); /* <-- change this line */ y = REAL(sy); should

> Ennapadam Venkatraman <venkat@biosta.mskcc.org> writes: >> > x <- NULL >> > x$x1 <- rnorm(10) >> > x$x2 <- rnorm(10) >> > mode(x) >> [1] "pairlist" >> > as.data.frame(x) >> Error: can't coerce p...

ls.print produces error that I don't seem to be able to trace. Output of the commands as follows: (hyeung is a 24x2 matrix of data) ------------------------------------------------- > summary(hyeung) x.1 x.2 Min. : 28.0 Min. : 10.0 1st Qu.: 72.0 1st Qu.: 87.5 Median : 86.5 Median : 92.5 Mean : 81.0 Mean : 82.5 3rd Qu.: 97.0 3rd Qu.:100.0 Max.

ls.print produces error that I don't seem to be able to trace. Output of the commands as follows: (hyeung is a 24x2 matrix of data) ------------------------------------------------- > summary(hyeung) x.1 x.2 Min. : 28.0 Min. : 10.0 1st Qu.: 72.0 1st Qu.: 87.5 Median : 86.5 Median : 92.5 Mean : 81.0 Mean : 82.5 3rd Qu.: 97.0 3rd Qu.:100.0 Max.

I am trying to use the function "nlm" to find the mle. I want to use a generic function for the likelihood which would require me to use both the parameters and the data as arguments. But nlm requires the function to have only the parameters as arguments for this function (see example below). > testfun <- function(x,y) sum((x-y)^2) # x - parameters, y - data >

...Symbol findfont definefont --(missing scalefont?) * PR# 120 * Subject: graphics bug: type="l" From: Matthew Wiener <mcw@ln.nimh.nih.gov> Date: Tue, 16 Feb 1999 15:30:25 -0500 (EST) --X server problem drawing > 64K lines at once. Workaround? * PR# 123 * Subject: Text in plot From: Ennapadam Venkatraman <venkat@biosta.mskcc.org> Date: Thu, 18 Feb 1999 13:05:37 -0500 --Multiline text not working * PR# 130 * Subject: lty=0 -- shouldn't it give an invisible line? From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk> Date: 28 Feb 1999 21:45:43 +0100 * PR# 149 * Subject: plot....

...o be solved. The --rest is still there (22feb99) * PR# 120 * Subject: graphics bug: type="l" From: Matthew Wiener <mcw@ln.nimh.nih.gov> Date: Tue, 16 Feb 1999 15:30:25 -0500 (EST) --X server problem drawing > 64K lines at once. Workaround? * PR# 123 * Subject: Text in plot From: Ennapadam Venkatraman <venkat@biosta.mskcc.org> Date: Thu, 18 Feb 1999 13:05:37 -0500 --Multiline text not working * PR# 130 * Subject: lty=0 -- shouldn't it give an invisible line? From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk> Date: 28 Feb 1999 21:45:43 +0100 --Strange effect on barplo...

...o be solved. The --rest is still there (22feb99) * PR# 120 * Subject: graphics bug: type="l" From: Matthew Wiener <mcw@ln.nimh.nih.gov> Date: Tue, 16 Feb 1999 15:30:25 -0500 (EST) --X server problem drawing > 64K lines at once. Workaround? * PR# 123 * Subject: Text in plot From: Ennapadam Venkatraman <venkat@biosta.mskcc.org> Date: Thu, 18 Feb 1999 13:05:37 -0500 --Multiline text not working * PR# 130 * Subject: lty=0 -- shouldn't it give an invisible line? From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk> Date: 28 Feb 1999 21:45:43 +0100 --Strange effect on barplo...

...Symbol findfont definefont --(missing scalefont?) * PR# 120 * Subject: graphics bug: type="l" From: Matthew Wiener <mcw@ln.nimh.nih.gov> Date: Tue, 16 Feb 1999 15:30:25 -0500 (EST) --X server problem drawing > 64K lines at once. Workaround? * PR# 123 * Subject: Text in plot From: Ennapadam Venkatraman <venkat@biosta.mskcc.org> Date: Thu, 18 Feb 1999 13:05:37 -0500 --Multiline text not working * PR# 130 * Subject: lty=0 -- shouldn't it give an invisible line? From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk> Date: 28 Feb 1999 21:45:43 +0100 * PR# 149 * Subject: plot....