search for: elasticnet

Can anybody help me to run the Elasticnet package of R to build some model, i am a freshman to R language , when i use the Elasticnet package to my data, it always reture a error, but i can't settle that problem. I consider if there is any constrant of the data to that package? Can anyone help me to run the elasticnet and check my d...

Hello, I am attempting to use elasticnet to classify a number of documents. The features are words. The data is coded into a matrix with each document as a row and each word as a column. The data is binary, with {0,1} indicating the presence of a word. I want to use the cross validation function of elasticnet (cv.enet). However, wh...

...except I am having problem in plotting standardized (adaptive lasso) coefficients vs. |beta|/max(|beta|). It seems that plot(out.adalasso) provides plot for beta_new. How can i get similar plot for beta_adalasso. -- View this message in context: http://www.nabble.com/Plotting-problem--lars%28%29-elasticnet%28%29--tp24446187p24446187.html Sent from the R help mailing list archive at Nabble.com.

...want to store the coefficient values. I have performed a Elastic Net regression and I want to store the coeffcients in each iteration. I got an error message . I do not know where is the problem???? Please help me. Thanks *Code:* ------------------------------------------------------- library(elasticnet) X<-matrix(rnorm(200),ncol=20) Y<-matrix(rnorm(200),ncol=20) loop <- 20 size <- 20 enres<-matrix(nrow = size, ncol = loop) fit<-matrix(nrow = size, ncol = loop) store<-matrix(nrow = size, ncol = loop) for(j in 1: 10) print (paste(j,"/200",sep="")) { enres&lt...

Dear R users,   I am new user for elastic net. I am trying to use elasticnet library. I have marker data with 359 markers and 168 samples, and response is metabolites. I am trying to do regression between a metabolite and markers.  But i am getting the following error:   > en<-enet(marker,as.numeric(vio),lambda=0.5,normalize=FALSE,intercept=TRUE) Error in one %*% x :...

Dear R user, I am looking for a code on double cross validation in LASSO , one for optimizing the parameter and other one is for MSEP. If any one have it, please foroward to me. I am using different package like LARS, chemometric etc. Thanks in advance Alex [[alternative HTML version deleted]]

Hi,   I'm using lars package to run some regression analysis and my doubt now is how can I predict my model to another dataset? Let me explain a little better: I have a dataset from which I withhold some data. With the data that wasn't withheld, I create the model. Now, what I'm not being able to do is apply the model back to the data that I withheld. Any suggestions?   Here it goes

...scorecard using a dataset which has a variable depicting actual credit history (good/bad) and 41 other variables of yes/no type. The procedure I am asked to follow is to use a penalized logistic procedure for variable selection. I have located the package "glmnet" which gives the complete elasticnet regularization path for logistic models. I want some help in setting up the process. Can someone point out the basic steps? Thanks Sambit

...ot;,"monomvn"," > foba","logicFS","rPython","qrnn","randomGLM","msaenet"," > Rborist","relaxo","ordinalNet","rrf","frbs","extraTrees"," > ipred","elasticnet","bst","brnn","Boruta","arm","elmNN"," > evtree","extraTrees","deepnet","kknn","KRLS","RSNNS","partDSA","plsRglm"," > quantregForest","ranger&q...

...nomvn"," >> foba","logicFS","rPython","qrnn","randomGLM","msaenet"," >> Rborist","relaxo","ordinalNet","rrf","frbs","extraTrees"," >> ipred","elasticnet","bst","brnn","Boruta","arm","elmNN"," >> >evtree","extraTrees","deepnet","kknn","KRLS","RSNNS","partDSA","plsRglm"," >> quantregForest",&q...

The version 1.1 update to my glmnetUtils package is now available on CRAN. glmnetUtils provides a formula interface for the 'glmnet' package for elasticnet regression, a method for cross-validating the alpha parameter, and other quality-of-life tools. >From the NEWS.md file: - Now allows interaction and expression terms without requiring use.model.frame=TRUE. This works in an additive fashion, ie the formula ~ a + b:c + d*e is treated as consist...

...packages have been released. caret (short for "Classification And REgression Training") aims to simplify the model building process. The package has functions for data splitting, pre-processing and model tuning, as well as other miscellaneous functions. In the new versions: - The elasticnet and the lasso (from the enet package) have been added - mars and fda models are now fit using the earth package. Instead of using nk as a tuning parameter, these models now use the default nk from the training set and tunes over nprune. This mimics the process used by earth/mars/fda more closel...

...packages have been released. caret (short for "Classification And REgression Training") aims to simplify the model building process. The package has functions for data splitting, pre-processing and model tuning, as well as other miscellaneous functions. In the new versions: - The elasticnet and the lasso (from the enet package) have been added - mars and fda models are now fit using the earth package. Instead of using nk as a tuning parameter, these models now use the default nk from the training set and tunes over nprune. This mimics the process used by earth/mars/fda more closel...

...umber of non zero loading is 1 pc5 number of non zero loading is 1 pc6 number of non zero loading is 1 *How can I know in which pc,s how many non zero loadings will be? Any code??? One answer can be cross validation but I did not find in the package. * ** *Thanks for your help* *Code:* library(elasticnet) > out2<-spca(pitprops,*K=6*,type="Gram",sparse="varnum",trace=TRUE,* para=c(7,4,4,1,1,1)) *iterations 10 iterations 20 iterations 30 iterations 40 > out2 Call: spca(x = pitprops, K = 6, para = c(7, 4, 4, 1, 1, 1), type = "Gram", sparse = "varnum&quot...

Hello everybody, I would need some help from you. I am trying to fit a logistic model to some presence absence data of animals living on river islands. I have got 12 predictor variables and I am trying to use a stepwise forward method to fit the best logistic model to my data. I am using the function STEP (stats). I have a question for you. Can I use step function if my variables have a

Dear Members, I am working on Elastic net and using R package for that. I have two matrix. My response is a matrix of size 50X50 and predictor is also in same size. I want to extract only cloumns from the matrix and do the elastic net analysis then store them as a matrix. library(elasticnet) library(lars) XB<-matrix(rnorm(2500,0,1), ncol=50,nrow=50) y1<-matrix(rnorm(2500,0,1), ncol=50,nrow=50) en1<-enet(x=XB,y=y1[,1],lambda=1,normalize=TRUE,intercept=TRUE) # here I have used one column 1 as my respose coefs<-predict(en1,s=0.45,type="coef",mode="fraction&quo...

Dear R-users I'm trying to use lasso in lars package for subset regression, I have a large matrix of size 1000x100 and my aim is to select a subset k of the 100 variables. Is there any way in lars to fix the number k (i.e. to select the best 10 variables) library(lars) aa=lars(X,Y,type="lasso",max.steps=200) plot(aa,plottype="Cp") aa$RSS which.min(aa$RSS)

The version 1.1 update to my glmnetUtils package is now available on CRAN. glmnetUtils provides a formula interface for the 'glmnet' package for elasticnet regression, a method for cross-validating the alpha parameter, and other quality-of-life tools. >From the NEWS.md file: - Now allows interaction and expression terms without requiring use.model.frame=TRUE. This works in an additive fashion, ie the formula ~ a + b:c + d*e is treated as consist...

..., a package which fits the L1 regularization path for generalized linear models. The revision includes: - coxpath, a function for fitting the L1-regularization path for the Cox ph model; - bootstrap functions for analyzing sparse solutions; - the ability to mix in L2 regularization along with L1 (elasticnet). We have also completed a report that describes these methods in detail: http://www-stat.stanford.edu/~hastie/Papers/glmpath.pdf The lars package in R fits the entire piecewise-linear L1 regularization path for the lasso. The coefficient paths for L1 regularized glms, however, are not piecewi...

..., a package which fits the L1 regularization path for generalized linear models. The revision includes: - coxpath, a function for fitting the L1-regularization path for the Cox ph model; - bootstrap functions for analyzing sparse solutions; - the ability to mix in L2 regularization along with L1 (elasticnet). We have also completed a report that describes these methods in detail: http://www-stat.stanford.edu/~hastie/Papers/glmpath.pdf The lars package in R fits the entire piecewise-linear L1 regularization path for the lasso. The coefficient paths for L1 regularized glms, however, are not piecewi...