search for: eisen

I am attempting to replicate what Cluster 3.0 and Treeview (both by Mike Eisen) to cluster both microarray genes and arrays does using R with hclust. I basically utilized the plot.mat function in sma library with some layout() and hclust(). 1. Can I know if some has already written such a function or available in some package. 2. If not, would appreciate if someone could ta...

Dear R-users, I would like to use Cluster 3.0 for my data because of its zooming, link out and copy (gene)labels into clipboard options. Unfortunately the program doesnt allow use of the distance metrics I would like to use. I would like to ask if there is some library, that allows saving dendrogram object in the format readable by Cluster. Thank you for reply. --

...r syntax ? I've tried setting up my entry in rsync.exclude as: '/opt/IBMHTTPDLOG/archivelogs' archivelogs/ 'archivelogs/' ./archivelogs ./archivelogs/ I've also tried setting the server-side rsync daemon as --exclude <blah-blah> to no avail. Thanks in advance, Eisen Chao CNA Insurance

Hello everyone, I have the following code which keeps giving me an error. The code is: dat<-read.table(file="C:\\Documents and Settings\\Owner\\My Documents\\eisen.txt",header=T,row.names=1,blank.lines.skip=F,na..strings="NA") dimnames(dat)((1)) <-as.character(dat(,1)) dat<-dat(,-1) dat<-as.data.frame(dat) file.show(file="C:\\Documents and Settings\\Owner\\My Documents\\eisen.txt") ann<-read.table(file="C:\\Documents...

Hi to all, I have a question about the callerid (msn number) off calls comming FROM a queue. This is my setup: - ISDN using zap (zaphfc) - Incomming calls arrive in a queue - One of the members of the queue is my cell phone... member => Zap/g1/XXX73XX19 (X to protect my privacy ;-)) The problem is the call from the queue to my cell phone. In a dailplan i can set the outgoing msn using

...he remote rsync encounters an error that is local, say a disk I/O error, does this error get eventually sent back to the client ? If so, can you encapsulate rsync inside of a shell script to react different ways depending upon the returned result code from the remote copy of rsync ? Thanks, Eisen Chao CNA Insurance Chicago

But it sounds like there is definitely an rsync port to D'ohnet -----Original Message----- From: rsync-bounces+eisen.chao=cna.com@lists.samba.org [mailto:rsync-bounces+eisen.chao=cna.com@lists.samba.org] On Behalf Of Mark Thornton Sent: Friday, July 15, 2005 2:18 PM To: Stuart Halliday Cc: rsync@lists.samba.org Subject: Re: DotNet Version Of Rsync Stuart Halliday wrote: >R-type Studios <rtypestudios@gmai...

...read only = false path = /tmp comment = Testing Area for writing files/dirs Versions of rsync running on both source & destination are 2.4.6 for HP-UX. Are there some other lags to force it change only on datestamps ? What about In my copy of /etc/rsyncd.conf Thanks, Eisen Chao CNA Insurance

Dear all, I am happy to tell you that I received a Digium's TDM20B card for my Asterisk box today. but the phone jack is RJ45 instead of RJ11. So Please I need precise instructions to connect a phone to this card. please, assume that I have a phone (a normal analouge phone connected to the one end of a cable with an RJ11 jack (at the phone side). and now I want to connect the other end to the

Hi there, I have tried enough of it and couldnt get any where. I have a Redhat 9.x box with rsync I want to backup contents on the RH to Win2K box. I have copied required cygwin DLL's and rsync.exe,ssh-keygen.exe and ssh.exe. I set up my pub rsa id and all that stuff. My problem is here: I have a batch file which logs itself. The batch file contains some logging commands and rsync -avze ssh

Hi, all. I'm trying to cluster 12,500 objects using hclust from package mva. The distance matrix takes up nearly 600 MB. The distance matrix also needs to be copied when being passed to the fortran routine that actually does the clustering (it's modified during the clustering), so that's 1200 MB. I'm actually on a machine with 2.5 GB of memory (and nothing else running), so I

...sters. Mutual clusters are useful in their own right, and have the interesting property that they cannot be "broken" by many bottom-up methods. Tools that graphically integrate mutual clusters into bottom-up methods are also included in the library. Lastly, an implementation of Michael Eisen's bottom-up clustering algorithm is also in the library. A paper, soon to appear in Biostatistics, describes this work: Chipman, H., and Tibshirani, R. "Hybrid Hierarchical Clustering with Applications to Microarray Data", available at http://ace.acadiau.ca/math/chipmanh/papers/chip...

Dear All, Just start to use the long expected R, my focus will be doing clustering on microarray data, just wonder, anyone can show me any references to conquer the steep learning curve? Thanks! Best regards, Baoqiang Cao

Hi, I drew a plot with R of my data and now I would like to display the median values of each group above the respective datapoint in the plot. I already search for ages, but maybe I am just blind. I am sure that this has to be an option somewhere... I appreciate any kind of input! Best, Christian

...sters. Mutual clusters are useful in their own right, and have the interesting property that they cannot be "broken" by many bottom-up methods. Tools that graphically integrate mutual clusters into bottom-up methods are also included in the library. Lastly, an implementation of Michael Eisen's bottom-up clustering algorithm is also in the library. A paper, soon to appear in Biostatistics, describes this work: Chipman, H., and Tibshirani, R. "Hybrid Hierarchical Clustering with Applications to Microarray Data", available at http://ace.acadiau.ca/math/chipmanh/papers/chip...

...hat can be used by "heatmap." The reason I'd like to read in cluster files rather than cluster within R is that we use Cluster 3.0 and each clustering suite behaves differently with certain algorithms (e.g. "centroid-linkage" in cluster 3.0 vs "average-linkage" in Eisen's Cluster 2.0) as well as the order in which the tree is actually printed (doesn't change the meaning, but I prefer to continue with what we have been using). Anyway, if anyone knows a package that will read in cluster files in a format that I can use to create a heatmap using the "he...