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I have data I'd like to plot using the formula interface to boxplot. I call boxplot like so: with(mydata, boxplot(count ~ geno * tissue)) I get a boxplot with x axis labels like "wt.kidney". I would like to change the '.' to a newline. Where is this separator configured? Thanks, -Ed

...------------------------------- David L Carlson Department of Anthropology Texas A&M University College Station, TX 77843-4352 -----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Ista Zahn Sent: Thursday, September 28, 2017 12:27 PM To: Ed Siefker <ebs15242 at gmail.com> Cc: r-help <r-help at r-project.org> Subject: Re: [R] Boxplot, formula interface, and labels. mybp <- boxplot(count ~ geno * tissue, data = mydata, plot = FALSE) mybp$names <- gsub("\\.", "\n", mybp$names) bxp(mybp) See ?boxplot for details. Best,...

mybp <- boxplot(count ~ geno * tissue, data = mydata, plot = FALSE) mybp$names <- gsub("\\.", "\n", mybp$names) bxp(mybp) See ?boxplot for details. Best, Ista On Thu, Sep 28, 2017 at 12:40 PM, Ed Siefker <ebs15242 at gmail.com> wrote: > I have data I'd like to plot using the formula interface to boxplot. > I call boxplot like so: > > with(mydata, boxplot(count ~ geno * tissue)) > > I get a boxplot with x axis labels like "wt.kidney". I would like > to change the '.&...

...n and not at the console? Shouldn't I be able to rely on what I do at the console working in a script? Is this inconsistent behavior by design? On Thu, Nov 2, 2017 at 11:54 AM, David Winsemius <dwinsemius at comcast.net> wrote: > >> On Nov 2, 2017, at 9:27 AM, Ed Siefker <ebs15242 at gmail.com> wrote: >> >> I have a function: >> >> myplot <- function (X) { >> d <- plotCounts(dds2, gene=X, intgroup="condition", returnData=TRUE) >> png(paste("img/", X, ".png", sep="")) >> ggplot...

I have dose response data analyzed with the package 'drc'. 'summary(mymodel)' prints my kinetic parameters. I want that text in an ASCII text file. I want to get exactly what I would get if I copied and pasted from the terminal window. I've read the documentation on data export to text files here:

I have a list of suffixes I want to turn into file names with extensions. suff<- c("C1", "C2", "C3") paste("filename_", suff[[1]], ".ext", sep="") [1] "filename_C1.ext" How do I use lapply() on that call to paste()? What's the right way to do this: filenames <- lapply(suff, paste, ...) ? Can I have lapply()

...5 F9.20DKO PEd2 E11.5 F9.20DKO PEd2 E11.5 F9.20DKO E11.5 F9.20DKO j0J1 E11.5 F9.20DKO j0J1 E11.5 F9.20DKO > colnames(samples) [1] "quant_samples" "age" "geno" Really, really confused. On Tue, Oct 24, 2017 at 12:58 PM, Ed Siefker <ebs15242 at gmail.com> wrote: > Why doesn't this work? > >> samples$geno <- as.data.frame(sapply(yo, toupper), col.names="geno") >> samples > quant_samples age sapply(yo, toupper) > E11.5 F20het BA40 E11.5 F20het BA40 E11.5...

Why doesn't this work? > samples$geno <- as.data.frame(sapply(yo, toupper), col.names="geno") > samples quant_samples age sapply(yo, toupper) E11.5 F20het BA40 E11.5 F20het BA40 E11.5 F20HET E11.5 F20het BA45 E11.5 F20het BA45 E11.5 F20HET

?sink On May 18, 2018 9:47:25 AM PDT, Ed Siefker <ebs15242 at gmail.com> wrote: >I have dose response data analyzed with the package 'drc'. >'summary(mymodel)' prints my kinetic parameters. I want >that text in an ASCII text file. I want to get exactly what I >would get if I copied and pasted from the terminal window. >...

> On Nov 2, 2017, at 9:27 AM, Ed Siefker <ebs15242 at gmail.com> wrote: > > I have a function: > > myplot <- function (X) { > d <- plotCounts(dds2, gene=X, intgroup="condition", returnData=TRUE) > png(paste("img/", X, ".png", sep="")) > ggplot(d, aes(x=condition, y=cou...

Hi, I am running Debian Sid. I am having trouble with the R packages. Executing 'help()' or 'demo()' launches 'most' with no text. 'help.start()' works properly. When I try to install a package, I get the following problem: ********************************************************************* > install.packages("ctv") Installing package(s) into

I'm doing some string manipulation on a vector of file names, and noticed something curious. When I strsplit the vector, I get a list of character vectors. The list is numbered, as lists are. When I cast that list as a data frame with 'as.data.frame()', the resulting columns have names derived from the original filenames. Example code is below. My question is, where are these names

I would like to subset by dataframe by matching all rows that have any value from a list of values. I can get it to work if I have exactly one value, I'm not sure how to do it with a list of values though. This works and gives me exactly one line: my.df[ which( mydf$IDX==17)), ] I would like to do something like this: my.df[ which( mydf$IDX==c(17, 42), ] Obviously that won't work, but

Is there a way I can get the names of the arguments passed to a function from within a function?

I have a data frame full of integer values. I need a matrix full of numeric values. ?data.matrix reads: Return the matrix obtained by converting all the variables in a data frame to numeric mode and then binding them together as the columns of a matrix. This does not work. test.df <- data.frame(a=as.integer(c(1,2,3)), b=as.integer(c(4,5,6))) > class(test.df[[1,1]]) [1]

...00EE07", type = "h", ylim = c(0,6000), xlab = "DAX") points(interleave(EU$DAX, MIN = xi, MAX = xa, N = 130, channel = 2 ), EU$FTSE, col = "#EE000007", type = "h") Cheers, B. > On 2018-05-31, at 16:56, Ed Siefker <ebs15242 at gmail.com> wrote: > > I have two chromatograms I want plotted on the same axes. > I would like the plots to be transparent, so the first chart is > not obscured. > > I have tried adjustcolor(..., alpha.f=0.3), the problem is that > my chromatogram is so dense with datap...

I have a function: myplot <- function (X) { d <- plotCounts(dds2, gene=X, intgroup="condition", returnData=TRUE) png(paste("img/", X, ".png", sep="")) ggplot(d, aes(x=condition, y=count, color=condition)) + geom_point(position=position_jitter(w=0.1,h=0)) + scale_y_log10(breaks=c(25,100,400)) + ggtitle(X) +

I have a list of file names, and a list of data frames contained in those files. mynames <- list.files() mydata <- lapply(mynames, read.delim) Every file contains two columns. > colnames(mydata[[1]]) [1] "Name" "NumReads" > colnames(mydata[[2]]) [1] "Name" "NumReads" I can set the colnames easily enough with a for loop. for (i in

I am experiencing data loss on a CIFS share with Samba 3.6.3. I am running Debian Sid on x86. I mount the share with the following line in my fstab: //server/share /mnt/share cifs auto,users,rw,gid=50,dir_mode=0775,file_mode=0777,domain=DOMAIN,credentials=/root/share.credentials The user in the credential file is in the proper domain. GID 50 is "staff", which my user is a member

I have two chromatograms I want plotted on the same axes. I would like the plots to be transparent, so the first chart is not obscured. I have tried adjustcolor(..., alpha.f=0.3), the problem is that my chromatogram is so dense with datapoints that they overlap and the entire graph just ends up a solid color. The second histogram still obscures the first. Consider this example: col1 <-