search for: ebi

Displaying 20 results from an estimated 175 matches for "ebi".

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2012 Oct 27
0
Remote access to R/Bioconductor on EBI's 64-bit Linux Cluster
Hi Rusers Here is a place for testing R on Cloud. http://www.ebi.ac.uk/Tools/rcloud/ <http://www.ebi.ac.uk/Tools/rcloud/> Start the workbench by downloading the package for your operating system (Macintosh or Windows), or via Java Web Start, and you will get access to an instance of R running on one of EBI's powerful machines. You can install additi...
2006 Jun 12
1
strange behaviour with rotated viewports in grid
...,height=0.9,angle=0,name="vp2")) grid.rect() upViewport() pushViewport(viewport(width=0.3,height=0.9,angle=10,name="vp3")) grid.rect() Dr. Rafael Najmanovich European Bioinformatics Institute Wellcome Trust Genome Campus Cambridge CB10 1SD United Kingdom rafael.najmanovich at ebi.ac.uk - www.ebi.ac.uk/~rafi +44-1223-492599 (voice) +44-7786-968257(mobile) +44-1223-494468 (fax)
2007 Nov 19
1
biocep project (R for the Web and the Virtual R Workbench)
Dear all, I have been writing during last year at the European Bioinformatics Institute a general unified open source solution for R integration. This work is now available via this link: http://www.ebi.ac.uk/microarray-srv/frontendapp/ The different frameworks and tools of the biocep project are now robust enough for production use. The different APIs are finalized but the documentation is incomplete. the last version of the biocep README file can be found here : http://www.ebi.ac.uk/microarra...
2008 Jan 14
2
knnFinder package
...hbor searching in arbitrarily high dimensions) that may trigger segmentation faults. I have fixed them but I had troubles to contact its maintainer Samuel E. Kemp (previously with the University of Glamorgan, UK). Do someone know where I can reach him ? Best regards, Greg --- Gregoire Pau EMBL/EBI Cambridge, UK http://www.ebi.ac.uk/~gpau
2008 Jul 11
1
Subsetting an array by a vector of dimensions
Hi Is it possible to subset an n-dimensional array by a vector of n dimensions? E.g. assume I have > x <- array(1:24, dim=2:4) > x[1,1,2] [1] 7 > dims <- c(1,1,2) I would like a function that I can supply x and dims as parameters to, and have it return 7. Also, I would like to do something like: > x[1,1,] [1] 1 7 13 19 > dims2<- c(1,1,NA) And have a function of x and
2008 Oct 15
1
error installing gtools (PR#13168)
Full_Name: Ebi Hal Version: R-2.7.2-1 OS: Fedora core 9 Submission from: (NULL) (129.215.170.238) I tried to install gplots by running R> install.packages("gplots") but the process failed while installing "gtools" with the following error message: * Installing to library '/usr/lib64/...
2009 Apr 28
1
Samba with AD/winbind - recurring message
we've got a Samba 3 server up and running with AD integration via winbind. Everything is working nicely but there is this persistent message on my console that pops up at least 1x per hour, sometimes more frequently. Apr 27 23:01:02 ebi-prod01 winbindd[5456]: [2009/04/27 23:01:02, 0] libads/sasl.c:ads_sasl_spnego_bind(330) Apr 27 23:01:02 ebi-prod01 winbindd[5456]: kinit succeeded but ads_sasl_spnego_krb5_bind failed: Strong(er) authentication required winbind is definitely talking to the domain controller and is able to ret...
2006 Jun 08
1
"reversed" dendogram
...o be able to plot it in a way such that if would display 10-1 bottom to top or left to right. Any idea how to achieve this? Thanks in advance, r. Dr. Rafael Najmanovich European Bioinformatics Institute Wellcome Trust Genome Campus Cambridge CB10 1SD United Kingdom rafael.najmanovich at ebi.ac.uk - www.ebi.ac.uk/~rafi +44-1223-492599 (voice) +44-7786-968257(mobile) +44-1223-494468 (fax)
2007 Aug 31
1
Question on shardsplot
...library(klaR) iris.som3 <- som(iris[,1:4], xdim = 14,ydim = 6) library(klaR); opar<- par(xpd = NA) shardsplot(iris.som3, data.or = iris,label = TRUE) legend(3.5,14.3, col = rainbow(3), xjust =0.5, yjust = 0,legend = levels(iris[, 5]),pch = 16, horiz = TRUE) par(opar) ---------------- Ebi [[alternative HTML version deleted]]
2007 Mar 06
2
SVG and tooltips, hyperlinks
...inks, so I am helping myself by giving the objects funny unique colors and then postprocessing the .svg file. I wonder whether somebody has already implemented this in a more elegant way. Best wishes Wolfgang ------------------------------------------------------------------ Wolfgang Huber EBI/EMBL Cambridge UK http://www.ebi.ac.uk/huber
2009 Feb 25
1
Unexpected side effect of the ":::" operator on the value of isGeneric
...ase packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] IRanges_1.1.40 loaded via a namespace (and not attached): [1] Biobase_2.3.10 Best wishes Wolfgang ------------------------------------------------------------------ Wolfgang Huber EBI/EMBL Cambridge UK http://www.ebi.ac.uk/huber
2008 Apr 29
2
reproducible segmentation fault caused by textConnection()
...n_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices datasets utils methods base Greg --- Gregoire Pau EMBL/EBI Cambridge, UK http://www.ebi.ac.uk/~gpau
2007 Nov 19
0
biocep project - R for the Web and the Virtual R Workbench
Dear all, I have been writing during last year at the European Bioinformatics Institute a general unified open source solution for R integration. This work is now available via this link: http://www.ebi.ac.uk/microarray-srv/frontendapp/ The different frameworks and tools of the biocep project are now robust enough for production use. The different APIs are finalized but the documentation is incomplete. the last version of the biocep README file can be found here : http://www.ebi.ac.uk/microarray-s...
2006 Jul 10
1
Unexpected difference in Bounding Box of PDF graphics between (PR#9072)
huber at ebi.ac.uk wrote: > Full_Name: Wolfgang Huber > Version: R version 2.4.0 Under development (unstable) (2006-07-09 r38523) > OS: i686-pc-linux-gnu > Submission from: (NULL) (62.253.128.15) > > > There appears to be unintentional behaviour in the size of the bounding box for &g...
2008 Jul 31
0
hwriter - Writing R objects in HTML format
...L tables. hwriter combines the simple syntax of the xtable package and the strength of HTML/CSS styling. Making a complex HTML template with images, nested tables and nested HTML components is particularly easy. hwriter web page is written by itself, using 'example(hwriter)': http://www.ebi.ac.uk/~gpau/hwriter/ Its CRAN page is http://cran.r-project.org/web/packages/hwriter/ Hoping this package will be useful to the R community, Best regards, Greg -- Gregoire Pau EMBL/EBI Cambridge, UK http://www.ebi.ac.uk/~gpau _______________________________________________ R-packages mailing l...
2008 Oct 07
0
hwriter - Writing R objects in HTML format
...tables. hwriter combines the simple syntax of the xtable package and the strength of HTML/CSS styling. Making a complex HTML template with images, nested tables and nested HTML components is particularly easy. hwriter project page (written by itself, using 'example(hwriter)'): http://www.ebi.ac.uk/~gpau/hwriter/ Its CRAN page is http://cran.r-project.org/web/packages/hwriter/ Hoping this package will be useful to the R community, Best regards, Greg -- Gregoire Pau EMBL/EBI Cambridge, UK http://www.ebi.ac.uk/~gpau _______________________________________________ R-packages mailing l...
2008 Jul 31
0
hwriter - Writing R objects in HTML format
...L tables. hwriter combines the simple syntax of the xtable package and the strength of HTML/CSS styling. Making a complex HTML template with images, nested tables and nested HTML components is particularly easy. hwriter web page is written by itself, using 'example(hwriter)': http://www.ebi.ac.uk/~gpau/hwriter/ Its CRAN page is http://cran.r-project.org/web/packages/hwriter/ Hoping this package will be useful to the R community, Best regards, Greg -- Gregoire Pau EMBL/EBI Cambridge, UK http://www.ebi.ac.uk/~gpau _______________________________________________ R-packages mailing l...
2016 Jun 29
2
size-related rsync bugs?
...e rsync transfer is run by a program called dirvish that is run as a cron job. The log looks like this: ACTION: rsync -vrltH --delete --stats -D --numeric-ids --exclude-from=/nfs/scop5/data/msd/sifts-mirror/2016-06-28/exclude --link-dest=/nfs/scop5/data/msd/sifts-mirror/2016-06-07/tree rsync.ebi.ac.uk::pub/databases/msd/sifts/ /nfs/scop5/data/msd/sifts-mirror/2016-06-28/tree receiving incremental file list csv/pdb_chain_cath_uniprot.csv csv/pdb_chain_enzyme.csv csv/pdb_chain_go.csv broken pipe RESULTS: warnings = 0, errors = 1 ACTION: rsync -vrltH --delete --stats -D --numeric-ids --ex...
2002 Mar 20
4
rsync 2.5.4 on win2k machine
Hi, i have downloaded rsync 2.5.4 source and was trying to compile it on win2k machine. is it supported on win2k machine ? Please ignore warnings below about mktemp -- it is used in a safe way gcc -g -O2 -DHAVE_CONFIG_H -Wall -W -o rsync rsync.o generator.o receiver.o cle anup.o sender.o exclude.o util.o main.o checksum.o match.o syscall.o log.o backu p.o options.o flist.o io.o compat.o hlink.o
2018 Jun 13
3
r-base-dev not installing in Ubuntu 16.04
Hello All, When I try to install r-base-dev on my Ubuntu 16.04 it gives me the following error r-base-dev : Depends: dh-r but it is not installable E: Unable to correct problems, you have held broken packages. I added the following two repos deb https://mirrors.ebi.ac.uk/CRAN/bin/linux/ubuntu xenial-cran35 deb http://uk-mirrors.evowise.com/ubuntu/ bionic-backports main restricted universe but still giving error. Could you please suggest me how to fix it. Thank you. Best Regards, Syed ???????????? Dr. Syed Murtuza Baker Bioinformatics Core Facility Facult...