search for: ebam

...erforming rma. When I run these commands here I receive these errors: > plot(samnhi.out,seq(0.1,0.6,0.1)) > identify(samnhi.out,ll=FALSE) warning: no point with 0.25 inches warning: no point with 0.25 inches warning: no point with 0.25 inches Why does this happen. 2) Now I am trying to run EBAM: and when I type I get an error > find.out<-find.a0(datrmanhi,groupsnhi.cl,rand=123) Loading required package: affy Loading required package: affyio EBAM Analysis for the two class unpaired case. Warning: There are 1 genes which have variance Zero or no non-missing values. The d-v...

...erforming rma. When I run these commands here I receive these errors: > plot(samnhi.out,seq(0.1,0.6,0.1)) > identify(samnhi.out,ll=FALSE) warning: no point with 0.25 inches warning: no point with 0.25 inches warning: no point with 0.25 inches Why does this happen. 2) Now I am trying to run EBAM: and when I type I get an error > find.out<-find.a0(datrmanhi,groupsnhi.cl,rand=123) Loading required package: affy Loading required package: affyio EBAM Analysis for the two class unpaired case. Warning: There are 1 genes which have variance Zero or no non-missing values. The d-v...

...uot;) #tell R where site-library is In all other respects, however, my packages are working correctly. Example and sessionInfo() follows. thanks, Mark > require(siggenes) Loading required package: siggenes Loading required package: multtest Latest major changes in siggenes: Version 1.9.27: EBAM update completed. Added new vignette. Version 1.11.7: Improved version of EBAM for categorical data. Version 1.11.9: Added findDelta for determining the number of genes called differentially expressed for a given FDR, and vice versa. Attaching package: 'siggenes' The f...

Hi, I am using SAM (from siggenes_1.2.11 package) method to select genes from a microarray data set. After installing the latest R2.4.0 on my computer, to my surprise the results are totally different from that calculated using R2.1.1. Even the example code doesn't work the same way under these two versions of R. Does anybody know what is going on? Thanks for any suggestions.