Displaying 20 results from an estimated 70 matches for "dtenenba".
2015 Jan 13
2
R CMD build looking for texi2dvi in the wrong place (R-devel)
----- Original Message -----
> From: "Simon Urbanek" <simon.urbanek at r-project.org>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> Cc: "R-devel" <r-devel at r-project.org>
> Sent: Monday, January 12, 2015 5:50:35 PM
> Subject: Re: [Rd] R CMD build looking for texi2dvi in the wrong place (R-devel)
>
> Dan,
>
> On Jan 12, 2015, at 7:50 PM, Dan Tenenbaum <dtenenba a...
2015 Mar 19
2
CRAN binary, but no source
----- Original Message -----
> From: "G?bor Cs?rdi" <csardi.gabor at gmail.com>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> Cc: r-devel at r-project.org, "John McKown" <john.archie.mckown at gmail.com>
> Sent: Thursday, March 19, 2015 11:15:47 AM
> Subject: Re: [Rd] CRAN binary, but no source
>
>
>
>
> On Thu, Mar 19, 2015 at 2:04 PM, Dan Tenenbaum <...
2012 Mar 14
1
issue with Rd2pdf and \Sexpr in Rd files
...nning 'texi2dvi' on 'Rd2.tex' failed.
Messages:
/usr/bin/texi2dvi: pdflatex exited with bad status, quitting.
/usr/bin/texi2dvi: see Rd2.log for errors.
Output:
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
restricted \write18 enabled.
entering extended mode
(/Users/dtenenba/dev/bioc_devel/genefu/man/.Rd2pdf62869/Rd2.tex
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2011-07-01, ngerman-x-2011-07-01, afrikaans, ancientgreek, ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, cr...
2015 Mar 19
2
CRAN binary, but no source
----- Original Message -----
> From: "G?bor Cs?rdi" <csardi.gabor at gmail.com>
> To: "John McKown" <john.archie.mckown at gmail.com>
> Cc: r-devel at r-project.org
> Sent: Thursday, March 19, 2015 9:03:37 AM
> Subject: Re: [Rd] CRAN binary, but no source
>
> On Thu, Mar 19, 2015 at 11:59 AM, John McKown
> <john.archie.mckown at
2011 Mar 07
1
Problem building R-2.13 r54683 on Windows
...*** No rule to make target `Rzlib.def', needed by `Rzlib.dll'. Stop.
make[3]: *** [rlibs] Error 1
make[2]: *** [../../bin/i386/R.dll] Error 2
make[1]: *** [rbuild] Error 2
make: *** [all] Error 2
Hope someone can have a look.
Thanks
Dan
On Thu, Mar 3, 2011 at 10:50 AM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> I am building R-2.13 r54645 from source as described here:
> http://cran.r-project.org/doc/manuals/R-admin.html#Building-from-source
> The "make all recommended" command ends as follows on both 32 and 64-bit
> Windows (Windows Server 2003 R2 Enterpris...
2015 Mar 19
2
CRAN binary, but no source
> On 19 Mar 2015, at 19:45 , G?bor Cs?rdi <csardi.gabor at gmail.com> wrote:
>
> On Thu, Mar 19, 2015 at 2:19 PM, Dan Tenenbaum <dtenenba at fredhutch.org>
> wrote:
> [...]
>
>>
>> In github? ;-)
>>
>
> Well, that's the thing. If github/cran is a read-only mirror, then should I
> delete these versions from there, too? :) On CRAN not just the files are
> missing, but these versions are...
2015 Aug 12
2
download.file() on ftp URL fails in windows with default download method
...n Tenenbaum
Sent: Tuesday, August 11, 2015 09:51
To: Uwe Ligges <ligges at statistik.tu-dortmund.de>
Cc: R-devel at r-project.org
Subject: Re: [Rd] download.file() on ftp URL fails in windows with default download method
----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> To: "Uwe Ligges" <ligges at statistik.tu-dortmund.de>
> Cc: "R-devel at r-project.org" <r-devel at r-project.org>
> Sent: Saturday, August 8, 2015 4:02:54 PM
> Subject: Re: [Rd] download.file() on ftp URL fails in windows with
>...
2015 Aug 08
2
download.file() on ftp URL fails in windows with default download method
----- Original Message -----
> From: "Uwe Ligges" <ligges at statistik.tu-dortmund.de>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>, "R-devel at r-project.org" <r-devel at r-project.org>
> Sent: Saturday, August 8, 2015 3:57:34 PM
> Subject: Re: [Rd] download.file() on ftp URL fails in windows with default download method
>
>
>
> On 08.08.2015 01:11, Dan Tenenbaum wrote:...
2015 Mar 11
2
Notes on building a gcc toolchain for Rtools (but not multilib)
On 10/03/2015 3:17 PM, Duncan Murdoch wrote:
> On 10/03/2015 2:56 PM, Dan Tenenbaum wrote:
> >
> >
> > ----- Original Message -----
> >> From: "Duncan Murdoch" <murdoch.duncan at gmail.com>
> >> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> >> Cc: "Hsiu-Khuern Tang" <tangoh at gmail.com>, r-devel at r-project.org
> >> Sent: Tuesday, March 10, 2015 11:37:12 AM
> >> Subject: Re: [Rd] Notes on building a gcc toolchain for Rtools (but not multilib)
> >>
> >&g...
2016 Dec 08
1
require(..., quietly=TRUE) does not suppress warning
...if the behavior had changed, and that's what prompted me to write.
I know I can squelch the warning by wrapping the require() in suppressWarnings().
Dan
----- Original Message -----
> From: "John P. Nolan" <jpnolan at american.edu>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>, "R-devel" <r-devel at r-project.org>
> Sent: Thursday, December 8, 2016 12:37:02 PM
> Subject: RE: require(..., quietly=TRUE) does not suppress warning
> Well, it says "most often" no errors/warnings are given, so it is not
> contradictin...
2015 May 13
4
example fails during R CMD CHECK but works interactively?
...'t my tests that are failing (all of them pass
without problem) but one of the examples from the inst/examples directory.
I did try, however, to start R with the environmental variables as you
suggest but it had no effect on my tests.
Charles
On Wed, May 13, 2015 at 1:51 PM, Dan Tenenbaum <dtenenba at fredhutch.org>
wrote:
>
>
> ----- Original Message -----
> > From: "Charles Determan" <cdetermanjr at gmail.com>
> > To: r-devel at r-project.org
> > Sent: Wednesday, May 13, 2015 11:31:36 AM
> > Subject: [Rd] example fails during R CMD CHECK...
2015 Jan 13
0
R CMD build looking for texi2dvi in the wrong place (R-devel)
On 12/01/2015 6:26 PM, Dan Tenenbaum wrote:
>
>
> ----- Original Message -----
>> From: "Simon Urbanek" <simon.urbanek at r-project.org>
>> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
>> Cc: "R-devel" <r-devel at r-project.org>
>> Sent: Monday, January 12, 2015 5:50:35 PM
>> Subject: Re: [Rd] R CMD build looking for texi2dvi in the wrong place (R-devel)
>>
>> Dan,
>>
>> On Jan 12, 2015, at 7:50 PM, Da...
2015 Jan 13
2
R CMD build looking for texi2dvi in the wrong place (R-devel)
R CMD build fails with recent R-devel because it is looking for texi2dvi in /usr/local/bin, but on this system, MacTex has installed it in /usr/bin.
$ R CMD build IRanges
* checking for file 'IRanges/DESCRIPTION' ... OK
* preparing 'IRanges':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
2015 Aug 12
0
download.file() on ftp URL fails in windows with default download method
Hi David,
----- Original Message -----
> From: "David Smith" <davidsmi at microsoft.com>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>, "Uwe Ligges" <ligges at statistik.tu-dortmund.de>, "Elliot Waingold"
> <Elliot.Waingold at microsoft.com>
> Cc: "R-devel at r-project.org" <r-devel at r-project.org>
> Sent: Wednesday, August 12, 2015 12:42:39 PM
> Su...
2015 Aug 11
0
download.file() on ftp URL fails in windows with default download method
----- Original Message -----
> From: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> To: "Uwe Ligges" <ligges at statistik.tu-dortmund.de>
> Cc: "R-devel at r-project.org" <r-devel at r-project.org>
> Sent: Saturday, August 8, 2015 4:02:54 PM
> Subject: Re: [Rd] download.file() on ftp URL fails in windows with defau...
2015 Mar 11
0
Notes on building a gcc toolchain for Rtools (but not multilib)
----- Original Message -----
> From: "Duncan Murdoch" <murdoch.duncan at gmail.com>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> Cc: r-devel at r-project.org
> Sent: Wednesday, March 11, 2015 12:06:48 PM
> Subject: Re: [Rd] Notes on building a gcc toolchain for Rtools (but not multilib)
>
> On 10/03/2015 3:17 PM, Duncan Murdoch wrote:
> > On 10/03/2015 2:56 PM, Dan Tenenbaum wrote...
2015 Mar 10
3
Notes on building a gcc toolchain for Rtools (but not multilib)
----- Original Message -----
> From: "Duncan Murdoch" <murdoch.duncan at gmail.com>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> Cc: "Hsiu-Khuern Tang" <tangoh at gmail.com>, r-devel at r-project.org
> Sent: Tuesday, March 10, 2015 11:37:12 AM
> Subject: Re: [Rd] Notes on building a gcc toolchain for Rtools (but not multilib)
>
> On 10/03/2015 12:54 PM, Dan Tenenbaum wro...
2015 Aug 07
3
download.file() on ftp URL fails in windows with default download method
Hi,
> url <- "ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt"
> download.file(url, tempfile())
trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt'
Error in download.file(url, tempfile()) :
cannot open URL
2013 Apr 12
2
"Failed to locate the 'texi2pdf' output file"
Hi,
Every day a few Bioconductor packages (different ones each day) fail
to build, on Windows only, with an error like this:
D:\biocbld\bbs-2.13-bioc\meat>D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD
build --keep-empty-dirs --no-resave-data OrganismDbi
[...]
Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
Failed to locate the 'texi2pdf' output file (by
2015 Mar 11
2
Notes on building a gcc toolchain for Rtools (but not multilib)
On 11/03/2015 3:09 PM, Dan Tenenbaum wrote:
>
> ----- Original Message -----
> > From: "Duncan Murdoch" <murdoch.duncan at gmail.com>
> > To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> > Cc: r-devel at r-project.org
> > Sent: Wednesday, March 11, 2015 12:06:48 PM
> > Subject: Re: [Rd] Notes on building a gcc toolchain for Rtools (but not multilib)
> >
> > On 10/03/2015 3:17 PM, Duncan Murdoch wrote:
> > > On 10/03/2015...