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...in R_LIBS should appear in the output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..." However, $ export R_LIBS=/users/stgrad/dario/tmp/ $ Rscript -e ".libPaths()" [1] "/dskh/nobackup/biostat/Bioconductor" "/usr/local/lib/R/site-library" [3] "/usr/lib/R/site-library" "/usr/lib/R/library" Is there some other crucial information which I have missed ? -------------------------------------- Dario Strbenac PhD Student Un...

...containing the values ..." but doesn't mention anything about converting factors into integers. I'd expect the values to be of the same type. R version 3.4.0 (2017-04-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Linux 8 (jessie) Matrix products: default BLAS: /dskh/nobackup/biostat/software/R-3.4.0/lib/libRblas.so LAPACK: /dskh/nobackup/biostat/software/R-3.4.0/lib/libRlapack.so -------------------------------------- Dario Strbenac University of Sydney Camperdown NSW 2050 Australia

...e output of .libPaths, but they do not. The documentation contains "The library search path is initialized at startup from the environment variable R_LIBS ..." > > However, > > $ export R_LIBS=/users/stgrad/dario/tmp/ > $ Rscript -e ".libPaths()" > [1] "/dskh/nobackup/biostat/Bioconductor" "/usr/local/lib/R/site-library" > [3] "/usr/lib/R/site-library" "/usr/lib/R/library" > > Is there some other crucial information which I have missed ? > > -------------------------------------- >...

Good day, If the library path is changed with .libPaths, the command install.packages("/nb/dario/Biostrings_2.39.9.tar.gz", repos=NULL) fails with ** testing if installed package can be loaded Error : package ?S4Vectors? required by ?Biostrings? could not be found However, running library(S4Vectors) followed by sessionInfo() after the error shows that the package can indeed be