search for: dsign

...ing random genes that together follow the same expression level distribution. This is what I've done so far: geneExp is my data.frame with DE statistics. 6585 rows of genes, col one is gene ID. geneSet is my gene set, column one is gene ID. index is the index of the genes DE in my geneExp. dSign=density(geneExp[index,'baseMean']) #baseMean is a measure of expressionlevel prob=lapply(geneExp[,"baseMean"],function(x) approx(dSign$x,dSign$y,x)$y) prob=unlist(prob) So when I am doing my permutation I do: overlap=vector(0,length=10000) for (i in 1:10000) { index=sample(1:...

...md_genss = DIV-CC $@ + cmd_genss = $(CC) $(DIVCFLAGS) $(FILE_CFLAGS) \ + -DNAME=$(basename $(notdir $@)) -S -o $@ $< + +$(obj)/arch/$(KLIBCARCH)/%.ss: $(obj)/arch/$(KLIBCARCH)/divide.c + $(call if_changed,genss) + +$(obj)/arch/$(KLIBCARCH)/__divqu.ss: FILE_CFLAGS := -DSIGNED=0 -DREM=0 -DBITS=64 +$(obj)/arch/$(KLIBCARCH)/__remqu.ss: FILE_CFLAGS := -DSIGNED=0 -DREM=1 -DBITS=64 +$(obj)/arch/$(KLIBCARCH)/__divq.ss: FILE_CFLAGS := -DSIGNED=1 -DREM=0 -DBITS=64 +$(obj)/arch/$(KLIBCARCH)/__remq.ss: FILE_CFLAGS := -DSIGNED=1 -DREM=1 -DBITS=64 +$(obj)/arch/$(KLIBCARCH)/__div...

...H)/__negdi2.o \ + arch/$(KLIBCARCH)/setjmp.o \ + arch/$(KLIBCARCH)/syscall.o \ + arch/$(KLIBCARCH)/vfork.o \ + libgcc/__divdi3.o \ + libgcc/__moddi3.o \ + libgcc/__udivdi3.o \ + libgcc/__umoddi3.o \ + libgcc/__udivmoddi4.o + +arch/$(KLIBCARCH)/__Umod.o: arch/$(KLIBCARCH)/divide.c + $(CC) $(CFLAGS) -DSIGNED=0 -DREM=1 -DBITS=32 -DNAME=__Umod -c -o $@ $< +arch/$(KLIBCARCH)/__Udiv.o: arch/$(KLIBCARCH)/divide.c + $(CC) $(CFLAGS) -DSIGNED=0 -DREM=0 -DBITS=32 -DNAME=__Udiv -c -o $@ $< +arch/$(KLIBCARCH)/__Mod.o: arch/$(KLIBCARCH)/divide.c + $(CC) $(CFLAGS) -DSIGNED=1 -DREM=1 -DBITS=32 -DNAME=__Mod -...

..._udivdi3.o ../../libgcc/__umoddi3.o -klib-y += ../../libgcc/__udivmoddi4.o - -# Divide support -klib-y := __Umod.o __Udiv.o __Mod.o __Div.o - -quiet_cmd_cc-div = DIV-CC $@ - cmd_cc-div = $(KLIBCC) $(klibccflags) -c -o $@ $< - - -$(obj)/__Umod.o: $(src)/divide.c -KLIBCCFLAGS___Umod.o := -DSIGNED=0 -DREM=1 -DBITS=32 -DNAME=__Umod -$(obj)/__Udiv.o: $(src)/divide.c -KLIBCCFLAGS___Udiv.o := -DSIGNED=0 -DREM=0 -DBITS=32 -DNAME=__Udiv -$(obj)/__Mod.o: $(src)/divide.c -KLIBCCFLAGS___Mod.o := -DSIGNED=1 -DREM=1 -DBITS=32 -DNAME=__Mod -$(obj)/__Div.o: $(src)/divide.c -KLIBCCFLAGS___Div.o := -DS...

I have updated the klibc patchset based on feedback received. In particular, the patchset has been reorganized so as not to break git-bisect. Additionally, this updates the patch base to 2.6.17-git12 (d38b69689c349f35502b92e20dafb30c62d49d63) and klibc 1.4.8; the main difference on the klibc side is removal of obsolete code. This is also available as a git tree at: