Displaying 20 results from an estimated 28 matches for "dpofa".
2009 Mar 26
1
Bug? FORTTRAN help
I was feeling masochistic the other day and we have been having some wierd memory problems so I started digging into the source for L-BFGS-B. In the lbgfsb.c file I see the following code:
/* Cholesky factorization of (2,2) block of wn. */
F77_CALL(dpofa)(&wn[*col + 1 + (*col + 1) * wn_dim1], &m2, col, info);
if (*info != 0) {
*info = -2;
return;
}
If I am not mistaken this says that there is a m2 * col matrix that starts at 'col + 1 + (col + 1) * wn_dm1. Where wn_dm1 is 2 * m. My first question is to verify that statement....
2001 Jan 25
1
problems compiling R under digital unix 4.0d (PR#826)
...approx.o bakslv.o binning.o chisqsim.o chull.o
cpoly.o cumsum.o distance.o fft.o fmin.o fortran.o lbfgsb.o loglin.o
lowess.o machar.o maxcol.o massdist.o pretty.o rowsum.o sock.o
splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o
chol.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o
dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o lminfl.o
ranlib libappl.a
#make: No such file or directory
*** Exit 1
Stop.
*** Exit 1
Stop.
*** Exit 1
Stop.
fenchel:/net/prod/appl/R/R-1.2.1/>
The same problem appears when I try to compile v.1.2.0.
What...
2002 Feb 20
1
Pivoting in chol
...brary/base/man/chol.Rd (also attached)
5. Tidied up. Removed "chol.f", "dpoco.f" and "dposl.f" from
src/appl/Makefile.in, src/appl/ROUTINES, src/include/R_ext/Applic.h,
src/include/R_ext/Linpack.h, src/unix/FFDecl.h and src/unix/FFTab.h.
6. Note: Cannot remove "dpofa.f" because it is used in "lbfgsb.c".
I was following my nose a bit during this process. Everything seems to
be OK but if I have done something drastic I would appreciate it if
someone could tell me!
Cheers, Jonathan.
--
Jonathan Rougier Science Laboratories...
2006 Aug 03
1
question about dll crashing R
...mbol ) ;
ydims = getAttrib (cov , R_DimSymbol ) ;
mode = REALSXP;
nrx = INTEGER( xdims ) [ 0 ] ;
ncx = INTEGER( xdims ) [ 1 ] ;
nry = INTEGER( ydims ) [ 0 ] ;
ncy = INTEGER( ydims ) [ 1 ] ;
/* create the upper trianglular matrix A */
/* such that t(A) %*% A = Sigma */
GetRNGstate();
F77_CALL(dpofa) ( REAL( cov ), &nry , &ncy , &info);
Rprintf("Info = %d\n",info);
for(i=0;i<nry;i++)
for(j=0;j<i;j++)
REAL(cov)[i+j*ncy] = 0.0;
PROTECT( ans = allocMatrix (mode, nrx , one ) ) ;
for(i=0;i<nry;i++)
REAL(temp)[i] = rnorm(0,1);
ans = tmatrixprod(cov,temp);
f...
2000 Apr 24
1
compiling R-1.0.1 under Solaris
...o binning.o chisqsim.o
chu
ll.o cpoly.o cumsum.o distance.o fft.o fmin.o fortran.o lbfgsb.o
loglin.
o lowess.o machar.o massdist.o pretty.o pythag.o rowsum.o sock.o
splines
.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o
dpbfa.
o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o
dqrs
l.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o lminfl.o blas.o
: libappl.a
siga --> Job output
cr libappl.a Rsock.o S_compat.o approx.o bakslv.o binning.o chisqsim.o
chu
ll.o cpoly.o cumsum.o distance.o fft.o fmin.o fortran.o lbfgsb.o...
2005 Mar 29
1
final stages of installing R - please help?
...approx.o bakslv.o bandwidths.o binning.o chull.o
cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o loglin.o
lowess.o machar.o maxcol.o massdist.o pretty.o rcont.o rowsum.o
splines.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o
chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o
dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o
lminfl.o blas.o zgemm.o
make[3]: *** [libappl.a] Error 1
make[3]: Leaving directory `/home/gruen/Applications/R-2.0.1/src/appl'
make[2]: *** [R] Error 2
make[2]: Leaving directory `/home/gruen/Applications/R-...
2008 Jun 03
1
IBM-AIX 5.2 (GCC 4.2.4 installed) - Error while executing 'make'
...-317 ERROR: Undefined symbol: .dcopy
ld: 0711-317 ERROR: Undefined symbol: .dtrsm
ld: 0711-317 ERROR: Undefined symbol: .ddot
ld: 0711-317 ERROR: Undefined symbol: .dnrm2
ld: 0711-317 ERROR: Undefined symbol: .dtrsl
ld: 0711-317 ERROR: Undefined symbol: .dscal
ld: 0711-317 ERROR: Undefined symbol: .dpofa
ld: 0711-317 ERROR: Undefined symbol: .daxpy
ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more
information.
collect2: ld returned 8 exit status
make: 1254-004 The error code from the last command is 1.
Stop.
make: 1254-004 The error code from the last command is 2.
Stop.
make: 125...
1998 Sep 11
1
R-beta: cannot make R
...h2inv.o
ch2inv.f:
ch2inv:
f77 -c chol.f -o chol.o
chol.f:
chol:
gcc -g -O2 -I../include -c cpoly.c
gcc -g -O2 -I../include -c cumsum.c
gcc -g -O2 -I../include -c distance.c
f77 -c dpoco.f -o dpoco.o
dpoco.f:
dpoco:
f77 -c dpodi.f -o dpodi.o
dpodi.f:
dpodi:
f77 -c dpofa.f -o dpofa.o
dpofa.f:
dpofa:
f77 -c dposl.f -o dposl.o
dposl.f:
dposl:
f77 -c dqrdc.f -o dqrdc.o
dqrdc.f:
dqrdc:
f77 -c dqrdc2.f -o dqrdc2.o
dqrdc2.f:
dqrdc2:
f77 -c dqrls.f -o dqrls.o
dqrls.f:
dqrls:
f77 -c dqrsl.f -o dqrsl.o
dqrsl.f:
dqrsl:
f77...
2004 Mar 30
5
optim-Bug (PR#6720)
Full_Name: Dr. Hans A. Kestler
Version: 1.8.1.
OS: Linux, Win, Mac OSX
Submission from: (NULL) (134.60.73.116)
The code below produces after a different number of iterations i the following
error:
Error in optim(par = rep(0.5, length(edges)), loglik, method = "L-BFGS-B", :
non-finite value supplied by optim
This was reproducible on different machines (Mac G4 OSX, AMD Opteron
2006 Feb 07
0
[R] R compile on AIX 5.2
...ld: 0711-317 ERROR: Undefined symbol: rs
ld: 0711-317 ERROR: Undefined symbol: dchdc
ld: 0711-317 ERROR: Undefined symbol: dpbfa
ld: 0711-317 ERROR: Undefined symbol: dpbsl
ld: 0711-317 ERROR: Undefined symbol: dpoco
ld: 0711-317 ERROR: Undefined symbol: dpodi
ld: 0711-317 ERROR: Undefined symbol: dpofa
ld: 0711-317 ERROR: Undefined symbol: dposl
ld: 0711-317 ERROR: Undefined symbol: dqrcf
ld: 0711-317 ERROR: Undefined symbol: dqrdc
ld: 0711-317 ERROR: Undefined symbol: dqrdc2
ld: 0711-317 ERROR: Undefined symbol: dqrls
ld: 0711-317 ERROR: Undefined symbol: dqrsl
ld: 0711-317 ERROR: Undefined symb...
1998 Nov 06
1
DEC alpha INSTALLATION R-0.62.4
...o blas.o
f77 -c ch2inv.f -o ch2inv.o
f77 -c chol.f -o chol.o
cc -ieee_with_inexact -g -I../../src/include -c cpoly.c
cc -ieee_with_inexact -g -I../../src/include -c cumsum.c
cc -ieee_with_inexact -g -I../../src/include -c distance.c
f77 -c dpoco.f -o dpoco.o
f77 -c dpodi.f -o dpodi.o
f77 -c dpofa.f -o dpofa.o
f77 -c dposl.f -o dposl.o
f77 -c dqrdc.f -o dqrdc.o
f77 -c dqrdc2.f -o dqrdc2.o
f77 -c dqrls.f -o dqrls.o
f77 -c dqrsl.f -o dql.o
f77 -c dqrutl.f -o dqrutl.o
f77 -c dsvdc.f -o dsvdc.o
f77 -c dtrsl.f -o dtrsl.o
cc -ieee_with_inexact -g -I../../src/include -c eigen.c
cc -ieee_wi...
1997 Dec 13
1
R-beta: Compile error; R-0.60.1, Solaris 2.6, gcc 2.7.2.1
...nv.o
gcc -g -I../include -c chol.c -o chol.o
gcc -g -I../include -c cpoly.c -o cpoly.o
gcc -g -I../include -c cumsum.c -o cumsum.o
gcc -g -I../include -c distance.c -o distance.o
gcc -g -I../include -c dpoco.c -o dpoco.o
gcc -g -I../include -c dpodi.c -o dpodi.o
gcc -g -I../include -c dpofa.c -o dpofa.o
gcc -g -I../include -c dposl.c -o dposl.o
gcc -g -I../include -c dqrdc.c -o dqrdc.o
gcc -g -I../include -c dqrdc2.c -o dqrdc2.o
gcc -g -I../include -c dqrls.c -o dqrls.o
gcc -g -I../include -c dqrsl.c -o dqrsl.o
gcc -g -I../include -c dqrutl.c -o dqrutl.o
gcc -g -I../includ...
1998 Dec 08
0
R compile problems with AIX
...v.o
f77 -c chol.f -o chol.o
gcc -g -O2 -I../include -I../../src/include -c cpoly.c -o cpoly.o
gcc -g -O2 -I../include -I../../src/include -c cumsum.c -o cumsum.o
gcc -g -O2 -I../include -I../../src/include -c distance.c -o distance.o
f77 -c dpoco.f -o dpoco.o
f77 -c dpodi.f -o dpodi.o
f77 -c dpofa.f -o dpofa.o
f77 -c dposl.f -o dposl.o
f77 -c dqrdc.f -o dqrdc.o
f77 -c dqrdc2.f -o dqrdc2.o
f77 -c dqrls.f -o dqrls.o
f77 -c dqrsl.f -o dqrsl.o
f77 -c dqrutl.f -o dqrutl.o
f77 -c dsvdc.f -o dsvdc.o
f77 -c dtrco.f -o dtrco.o
f77 -c dtrsl.f -o dtrsl.o
gcc -g -O2 -I../include -I../../src/inc...
1998 Dec 08
0
R compile problems with AIX
...v.o
f77 -c chol.f -o chol.o
gcc -g -O2 -I../include -I../../src/include -c cpoly.c -o cpoly.o
gcc -g -O2 -I../include -I../../src/include -c cumsum.c -o cumsum.o
gcc -g -O2 -I../include -I../../src/include -c distance.c -o distance.o
f77 -c dpoco.f -o dpoco.o
f77 -c dpodi.f -o dpodi.o
f77 -c dpofa.f -o dpofa.o
f77 -c dposl.f -o dposl.o
f77 -c dqrdc.f -o dqrdc.o
f77 -c dqrdc2.f -o dqrdc2.o
f77 -c dqrls.f -o dqrls.o
f77 -c dqrsl.f -o dqrsl.o
f77 -c dqrutl.f -o dqrutl.o
f77 -c dsvdc.f -o dsvdc.o
f77 -c dtrco.f -o dtrco.o
f77 -c dtrsl.f -o dtrsl.o
gcc -g -O2 -I../include -I../../src/inc...
2004 Feb 28
2
matrix inverse in C
Hi,
I'm writing an R package using the C code i've written. I'm wondering if
anyone knows an easy way to calculate an inverse and cholesky factor of a
matrix using the Fortran/C library of R: and how to call them from C. My
code is based on the Numerical Reciepe code, and I'm trying to use
something that is already in R.
Thanks for your help in advance,
Kosuke
1999 Jun 09
4
packages with FORTRAN code
Recent sensible changes to the dynload mechanism have made an old
problem resurface: how should we deal with packages which contain
Fortran code and may need to be linked against additional libraries
such as -lf2c?
The current consensus is that extra Fortran libraries maybe needed are
handled via the make variable FLIBS, and that `-lf2c' or `-lg2c' are
added by default if g77 is used.
2002 Jan 22
1
compile problem with bessel_i.c on IRIX64 flexor 6.5 10100655 IP35 (uname -a) (PR#1275)
..../../src/include -DHAVE_CONFIG_H -g -O2 -c zeroin.c -o zeroin.o
g77 -g -O2 -c ch2inv.f -o ch2inv.o
g77 -g -O2 -c chol.f -o chol.o
g77 -g -O2 -c dpbfa.f -o dpbfa.o
g77 -g -O2 -c dpbsl.f -o dpbsl.o
g77 -g -O2 -c dpoco.f -o dpoco.o
g77 -g -O2 -c dpodi.f -o dpodi.o
g77 -g -O2 -c dpofa.f -o dpofa.o
g77 -g -O2 -c dposl.f -o dposl.o
g77 -g -O2 -c dqrdc.f -o dqrdc.o
g77 -g -O2 -c dqrdc2.f -o dqrdc2.o
g77 -g -O2 -c dqrls.f -o dqrls.o
g77 -g -O2 -c dqrsl.f -o dqrsl.o
g77 -g -O2 -c dqrutl.f -o dqrutl.o
g77 -g -O2 -c dsvdc.f -o dsvdc.o
g77 -g -O2 -c dtrco.f -o dt...
2000 Oct 31
1
conflicting types for `Rf_stirlerr
...ude -I/usr/local/include
-DHAVE_CONFIG_H -g -O2 -c zeroin.c -o zeroin.o
g77 -g -O2 -c ch2inv.f -o ch2inv.o
g77 -g -O2 -c chol.f -o chol.o
g77 -g -O2 -c dpbfa.f -o dpbfa.o
g77 -g -O2 -c dpbsl.f -o dpbsl.o
g77 -g -O2 -c dpoco.f -o dpoco.o
g77 -g -O2 -c dpodi.f -o dpodi.o
g77 -g -O2 -c dpofa.f -o dpofa.o
g77 -g -O2 -c dposl.f -o dposl.o
g77 -g -O2 -c dqrdc.f -o dqrdc.o
g77 -g -O2 -c dqrdc2.f -o dqrdc2.o
g77 -g -O2 -c dqrls.f -o dqrls.o
g77 -g -O2 -c dqrsl.f -o dqrsl.o
g77 -g -O2 -c dqrutl.f -o dqrutl.o
g77 -g -O2 -c dsvdc.f -o dsvdc.o
g77 -g -O2 -c dtrco.f -o dtrco.o
g7...
2018 May 24
1
Trouble building R 3.5.0 under Ubuntu 18.04 (Bionic Beaver)
...elocation R_X86_64_32
against `.rodata' can not be used when making a PIE object; recompile
with -fPIC
/usr/bin/x86_64-linux-gnu-ld: ../appl/dpodi.o: relocation R_X86_64_32
against `.rodata' can not be used when making a PIE object; recompile
with -fPIC
/usr/bin/x86_64-linux-gnu-ld: ../appl/dpofa.o: relocation R_X86_64_32
against `.rodata' can not be used when making a PIE object; recompile
with -fPIC
/usr/bin/x86_64-linux-gnu-ld: ../appl/dposl.o: relocation R_X86_64_32
against `.rodata' can not be used when making a PIE object; recompile
with -fPIC
/usr/bin/x86_64-linux-gnu-ld: ../...
1999 May 03
1
problems compiling R-0.63.3 on alpha
.../../src/include -c cpoly.c -o
cpoly.o
gcc -ieee_with_inexact -g -I../include -I../../src/include -c cumsum.c -o
cumsum.o
gcc -ieee_with_inexact -g -I../include -I../../src/include -c distance.c -o
distance.o
f77 -g -fpe3 -c dpoco.f -o dpoco.o
f77 -g -fpe3 -c dpodi.f -o dpodi.o
f77 -g -fpe3 -c dpofa.f -o dpofa.o
f77 -g -fpe3 -c dposl.f -o dposl.o
f77 -g -fpe3 -c dqrdc.f -o dqrdc.o
f77 -g -fpe3 -c dqrdc2.f -o dqrdc2.o
f77 -g -fpe3 -c dqrls.f -o dqrls.o
f77 -g -fpe3 -c dqrsl.f -o dqrsl.o
f77 -g -fpe3 -c dqrutl.f -o dqrutl.o
f77 -g -fpe3 -c dsvdc.f -o dsvdc.o
f77 -g -fpe3 -c dtrco.f -o dtrco.o
f7...