search for: dontshow

...llowing example in an .Rd file: > #ifdef windows > if (require(doSNOW)) { > registerDoSNOW(cl <- makeCluster(2, type = "SOCK")) > ci(roc2, method="bootstrap", parallel=TRUE) > \dontrun{ci(roc2, method="bootstrap", parallel=TRUE)} > \dontshow{ci(roc2, method="bootstrap", parallel=TRUE, boot.n=20)} > stopCluster(cl) > } > #endif > #ifdef unix > if (require(doMC)) { > registerDoMC(2) > \dontrun{ci(roc2, method="bootstrap", parallel=TRUE)} > \dontshow{ci(roc2, method="bootstr...

Hi all, I've got a package i've written that i am trying to check, build, and install. This is my 1st time doing this, so apologies in advance... ;) The package that I've written requires input from the user. It needs to know sample sizes and then runs some calcs, (sample sizes are just integers), and it gets this info from the user as num_reps <- readline("How many reps

...def windows >>> if (require(doSNOW)) { >>> registerDoSNOW(cl <- makeCluster(2, type = "SOCK")) >>> ci(roc2, method="bootstrap", parallel=TRUE) >>> \dontrun{ci(roc2, method="bootstrap", parallel=TRUE)} >>> \dontshow{ci(roc2, method="bootstrap", parallel=TRUE, boot.n=20)} >>> stopCluster(cl) >>> } >>> #endif >>> #ifdef unix >>> if (require(doMC)) { >>> registerDoMC(2) >>> \dontrun{ci(roc2, method="bootstrap", parallel...

...getting CRAN errors due to the rawConnection not being closed in examples > cleanEx() Error: connections left open: content (rawConnection) and the only way to remove this is by removing the objects and calling gc() as part of the example code. While it is possible to hide all that inside a \dontshow{} block, it appears to me that it would be better if cleanEx() did a cleaning of the environment along with a single gc call prior to performing any checks on the end state. Is this something you would consider? best Thomas Lin Pedersen [[alternative HTML version deleted]]

...: r-help at stat.math.ethz.ch > Subject: RE: [R] Problem building/checking library that requires input > from user > > > Thanks, Dr Warnes & Prof Ripley... > > However, upon following the instructions below, I'm getting > syntax errors on > the line that has \dontshow...below is my code...I get the > same error if i > omit the first block and just try \dontrun... > > \dontshow{ > num_reps <- 10 > } > > \dontrun{ > num_reps <- readline(""How many reps do you have... ") > num_reps <- as.integer(num_reps) &g...

...: > > #ifdef windows > > if (require(doSNOW)) { > > registerDoSNOW(cl <- makeCluster(2, type = "SOCK")) > > ci(roc2, method="bootstrap", parallel=TRUE) > > \dontrun{ci(roc2, method="bootstrap", parallel=TRUE)} > > \dontshow{ci(roc2, method="bootstrap", parallel=TRUE, boot.n=20)} > > stopCluster(cl) > > } > > #endif > > #ifdef unix > > if (require(doMC)) { > > registerDoMC(2) > > \dontrun{ci(roc2, method="bootstrap", parallel=TRUE)} > >...

...he rawConnection not being closed in examples > >> cleanEx() > Error: connections left open: > content (rawConnection) > > and the only way to remove this is by removing the objects and calling gc() as part of the example code. While it is possible to hide all that inside a \dontshow{} block, it appears to me that it would be better if cleanEx() did a cleaning of the environment along with a single gc call prior to performing any checks on the end state. Is this something you would consider? Wouldn't it be possible for you to add a way to explicitly request the connection...

...functionality for print.trellis in fact, not for plot. par(ask=TRUE) does not influence print.trellis. trellis.par.get() does not have an equivalent for par(ask=). Nor does gpar() or any other method in Grid that I could find. I have tried to help myself (in an admittedly crude way) by putting \dontshow{plot(1,type="n") # make R stop and ask} before each Lattice plot call in my .Rd file. But that does not work either. It leads to R CMD check output as follows: > par(ask=TRUE) > ## Don't show: > plot(1,type="n") # make R stop and ask Press Return for next...

...s a pleasure to meet you at Iowa State University. Two days ago I submitted two experimental packages to CRAN (hope it will be there soon): rindex: quick indexing of large objects (currently only character, see ?index) regtest: some first support for automated regression testing (heavily used in \dontshow{} section of ?index) With rindex you can for example i <- index(rownames(someDataFrame)) # then this someDataFrame[match(fewRowNames, i),] # is much faster than that someDataFrame[match(fewRowNames, rownames(someDataFrame)),] # which still is much faster than someDataFrame[fewRowNames, ] # th...

Dear R-developers, I would like to suggest a 'method' slot for format.ftable() (see an adjusted 'format.ftable()' below, taken from the source of R-2.15.2). At the moment, format.ftable() contains several empty cells due to the way the row and column labels are printed. This creates problems (= unwanted empty columns/rows) when converting an ftable to a LaTeX table; see an

...'usage' for other objects documented here. #! \arguments{ #! \item{x}{ a fully serializable R object } #! } #! \value{ #! character scalar #! } #! \seealso{ \code{\link{digest}}, \code{\link[base]{serialize}} } #! \examples{ #! md5(pi) #! sha1(pi) #! crc32(pi) #! id1(pi) #! #! dontshow{ #! if (!identical(paste(serialize(list(str="a string", double=pi), connection=NULL)[-(1:14)], collapse=""), id1(list(str="a string", double=pi)))) #! stop("something has changed in serialization, please fix the internal .Calls in function 'id1',...

...gt;[*] no longer sets wrong "balanced" attribute, fixing PR#18681 thanks to Mikael Jagan. * str(<classed-call>) now deparses the call as expected, fixing PR#18684, reported by Dave Slager. * In Rd examples, code following the closing brace of a \dontrun, \dontshow or \donttest tag on the same line is no longer skipped when R CMD check runs the examples. * as.data.frame(matrix(*, ncol=0)) now gets valid names() and colnames(); reported by Davis Vaughan on the R-devel list. * Internal Mathlib function stirlerr(n) is now almost fully...

...gt;[*] no longer sets wrong "balanced" attribute, fixing PR#18681 thanks to Mikael Jagan. * str(<classed-call>) now deparses the call as expected, fixing PR#18684, reported by Dave Slager. * In Rd examples, code following the closing brace of a \dontrun, \dontshow or \donttest tag on the same line is no longer skipped when R CMD check runs the examples. * as.data.frame(matrix(*, ncol=0)) now gets valid names() and colnames(); reported by Davis Vaughan on the R-devel list. * Internal Mathlib function stirlerr(n) is now almost fully...

...o Rdconv now produces more informative output from the special \method{GENERIC}{CLASS} markup for indicating the usage of S3 methods, providing the CLASS info in a comment. o \dontrun sections are now marked within comments in the user-readable versions of the converted help pages. o \dontshow is now the preferred name for \testonly. INSTALLATION CHANGES o The zlib code in the sources is used unless the external version found is at least version 1.1.4 (up from 1.1.3). o The regression checks now have to be passed exactly, except those depending on recommended packages (whic...

...o Rdconv now produces more informative output from the special \method{GENERIC}{CLASS} markup for indicating the usage of S3 methods, providing the CLASS info in a comment. o \dontrun sections are now marked within comments in the user-readable versions of the converted help pages. o \dontshow is now the preferred name for \testonly. INSTALLATION CHANGES o The zlib code in the sources is used unless the external version found is at least version 1.1.4 (up from 1.1.3). o The regression checks now have to be passed exactly, except those depending on recommended packages (whic...