search for: dnacopi

Displaying 8 results from an estimated 8 matches for "dnacopi".

Did you mean: dnacopy
2009 Apr 21
2
DNAcopy package in R
Hi All: Has anyone analyzed Illumina 550K data using DNAcopy package? I have around 2300 samples. According to Venkatraman and Olshen 2007 paper, it needs about 25 min to run a single sample for Affymetrix 100K. I am afraid it will take too long to analyzed my data. Anybody has an idea? Thanks! Best, -- View this message in context:
2008 Feb 20
1
DNAcopy package output data
Hello R Developers I am using DNACopy package http://bioconductor.org/packages/1.9/bioc/html/DNAcopy.html I am not able to figure out how to (if at all possible) to modify output format, namely, I am getting the following: "ID" "chrom" "loc.start" "loc.end" "num.mark" "seg.mean" Is it a way to get also median and standard deviation?
2009 Mar 31
5
how to increase the limit for max.print in R
Hi All, I am using DNAcopy package in R for copy number analysis of 500K chip. The final output which I get from DNA copy is too big to be printed in a file. So I am getting an error as "reached getOption("max.print") -- omitted 475569 rows " Can somebody please provide me the pointers with how to increase the limit for max.print . Thanks, Pooja DISCLAIMER\
2011 Apr 03
1
Suggests and examples
I apologize in advance for probably missing something obvious, but if someone could point me in the right direction I'd be grateful. This NOTE is not unique to our package (I list a few others, below). Package bcp has several Suggests (strucchange, for example). Then in an Rd file, we have if (require(strucchange)) { # Doing some examples making use of strucchange } The CRAN check
2011 Sep 19
1
"could not find function" after import
I am trying to build a package (GWASTools, submitted to Bioconductor) that uses the "sandwich" package. I have references to "sandwich" in DESCRIPTION: Imports: methods, DBI, RSQLite, sandwich, survival, DNAcopy and NAMESPACE: import(sandwich) In the code itself is a call to vcovHC: Vhat <- vcovHC(mod, type="HC0") I have sandwich version 2.2-7 installed.
2009 Apr 22
2
Exporting objects plotted with plot3d() - rgl package
Dear all, Can anybody tell me how to export a 3d figure made with the plot3d function? I'm careless about whether it's still interactive or not in another format, as long I can get it out of R. Thanks! Alejandro Gonz?lez Departamento de Biodiversidad y Conservaci?n Real Jard?n Bot?nico Consejo Superior de Investigaciones Cient?ficas Claudio Moyano, 1 28014 Madrid, Spain Tel +0034
2004 May 17
0
Bioconductor 1.4 released
Greetings! The Bioconductor core group would like to announce the 5th release of Bioconductor, version 1.4. There are many new packages as well as several major upgrades and fixes in older packages, and users are encouraged to upgrade existing tools and check out the new packages. Release 1.4 is intended to be operated with R version 1.9.x, which can be obtained at CRAN
2009 Apr 01
0
回复: R-help Digest, Vol 73, Issue 32
Dear sir,    How to do bilinear time series in R?Is there any functions or packages?  thank you! -----Sincerely yours Kuangnan Fang 方匡南 敬上 department of statistics ,Economics school,Xia men University. Fujian Province (361005) China Mobile Phone:15860721915 SKYPE: ruiqwy MSN Messenger: ruiqwy@hotmail.com QQ:39863401 --- 09年3月31日,周二, r-help-request@r-project.org