Displaying 8 results from an estimated 8 matches for "dnacopi".
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dnacopy
2009 Apr 21
2
DNAcopy package in R
Hi All:
Has anyone analyzed Illumina 550K data using DNAcopy package? I have around
2300 samples. According to
Venkatraman and Olshen 2007 paper, it needs about 25 min to run a single
sample for Affymetrix 100K. I am afraid it will take too long to analyzed my
data. Anybody has an idea? Thanks!
Best,
--
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2008 Feb 20
1
DNAcopy package output data
Hello R Developers
I am using DNACopy package
http://bioconductor.org/packages/1.9/bioc/html/DNAcopy.html
I am not able to figure out how to (if at all possible) to modify
output format, namely, I am getting the following:
"ID" "chrom" "loc.start" "loc.end" "num.mark" "seg.mean"
Is it a way to get also median and standard deviation?
2009 Mar 31
5
how to increase the limit for max.print in R
Hi All,
I am using DNAcopy package in R for copy number analysis of 500K chip.
The final output which I get from DNA copy is too big to be printed in a
file.
So I am getting an error as "reached getOption("max.print") -- omitted
475569 rows "
Can somebody please provide me the pointers with how to increase the limit
for max.print .
Thanks,
Pooja
DISCLAIMER\
2011 Apr 03
1
Suggests and examples
I apologize in advance for probably missing something obvious, but if
someone could point me in the right direction I'd be grateful. This
NOTE is not unique to our package (I list a few others, below).
Package bcp has several Suggests (strucchange, for example).
Then in an Rd file, we have
if (require(strucchange)) {
# Doing some examples making use of strucchange
}
The CRAN check
2011 Sep 19
1
"could not find function" after import
I am trying to build a package (GWASTools, submitted to Bioconductor)
that uses the "sandwich" package. I have references to "sandwich" in
DESCRIPTION:
Imports: methods, DBI, RSQLite, sandwich, survival, DNAcopy
and NAMESPACE:
import(sandwich)
In the code itself is a call to vcovHC:
Vhat <- vcovHC(mod, type="HC0")
I have sandwich version 2.2-7 installed.
2009 Apr 22
2
Exporting objects plotted with plot3d() - rgl package
Dear all,
Can anybody tell me how to export a 3d figure made with the plot3d
function? I'm careless about whether it's still interactive or not in
another format, as long I can get it out of R.
Thanks!
Alejandro Gonz?lez
Departamento de Biodiversidad y Conservaci?n
Real Jard?n Bot?nico
Consejo Superior de Investigaciones Cient?ficas
Claudio Moyano, 1
28014 Madrid, Spain
Tel +0034
2004 May 17
0
Bioconductor 1.4 released
Greetings!
The Bioconductor core group would like to announce the 5th release of
Bioconductor, version 1.4. There are many new packages as well as
several major upgrades and fixes in older packages, and users are
encouraged to upgrade existing tools and check out the new packages.
Release 1.4 is intended to be operated with R version 1.9.x, which can
be obtained at CRAN
2009 Apr 01
0
回复: R-help Digest, Vol 73, Issue 32
Dear sir, How to do bilinear time series in R?Is there any functions or packages? thank you!
-----Sincerely yours
Kuangnan Fang 方匡南 敬上
department of statistics ,Economics school,Xia men University.
Fujian Province (361005) China
Mobile Phone:15860721915 SKYPE: ruiqwy
MSN Messenger: ruiqwy@hotmail.com
QQ:39863401
--- 09年3月31日,周二, r-help-request@r-project.org