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...ar -X32_64' MAKE='gmake' && gmake I am getting stuck at the following part of the make process. xlC_r -q64 -G -q64 -o methods.so do_substitute_direct.o methods_list_dispatch.o method_meta_data.o slot.o class_support.o tests.o -lm gmake[5]: Leaving directory `/xhome/cp/bench/DKFZ/R/src/library/methods/src' gmake[4]: Leaving directory `/xhome/cp/bench/DKFZ/R/src/library/methods/src' gmake[4]: Entering directory `/xhome/cp/bench/DKFZ/R/src/library/methods' dumping R code in package 'methods' Error in dyn.load(x, as.logical(local), as.logical(now)) :...

...e sockconn.lo contains an incorrect file suffix /opt/cross/bin/powerpc64-linux-ld: /opt/ibmcmp/vacpp/6.0/lib64/libxl.a(atoff.o)(.eh_frame+0x320): unresolvable relocation against symbol `.atoi@@GLIBC_2.2.5' gmake[4]: *** [internet.so] Error 1 gmake[4]: Leaving directory `/works/work5/cp/bench/DKFZ/R/src/modules/internet' gmake[3]: *** [R] Error 2 gmake[3]: Leaving directory `/works/work5/cp/bench/DKFZ/R/src/modules/internet' gmake[2]: *** [R] Error 1 gmake[2]: Leaving directory `/works/work5/cp/bench/DKFZ/R/src/modules' gmake[1]: *** [R] Error 1 gmake[1]: Leaving directory `/wor...

Full_Name: Wolfgang Huber Version: 1.6.2 OS: DEC OSF, Win, Linux Submission from: (NULL) (155.52.45.139) When data.frames are written to a file using write.table and with row.names and col.names, then the colnames are displaced by 1 with respect to column content. Example: > x = data.frame( > obscht=c("chriesi", "bire"), >

...hich I downloaded today from CRAN) > install.packages("D:/temp/pixmap.zip", .libPaths()[1], CRAN = NULL) updating HTML package descriptions Warning message: error -1 in extracting from zip file ------------------------------------------------------------ Dr. Wolfgang Huber http://www.dkfz.de/abt0840/whuber Tel +49-6221-424709 Fax +49-6221-42524709 DKFZ Division of Molecular Genome Analysis 69120 Heidelberg Germany -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "inf...

Full_Name: Grischa T?dt Version: 2.1.1 OS: windows XP Submission from: (NULL) (192.108.25.32) I have a strange behaviour in R, looks like type conversions are messed up. To reproduce: expected: > typeof(3) [1] "double" > as.integer(3) [1] 3 !!!! strange: > typeof((0.3/0.1)) [1] "double" > as.integer((0.3/0.1)) [1] 2 also for trunc: >trunc(c(5,7))

Where is my error?? I have a strange behaviour in R, looks like type conversions are messed = up. Maybe i just make a stupid mistake, but help would be appreciated. To reproduce: expected: > typeof(3) [1] "double" > as.integer(3) [1] 3 > typeof((0.3/0.1)) [1] "double" !!!! strange: > as.integer((0.3/0.1)) [1] 2 also for trunc: >trunc(c(5,7)) [1] 5 7

...dea about the memory issue, since the fast=FALSE option does exactly what its name suggests ;-) Florian -- Florian Hahne Molecular Genome Analysis (B050) German Cancer Research Center Im Neuenheimer Feld 580 D-69120 Heidelberg Germany room TP3 2.204 phone ++49 6221 42-4764 email f.hahne at dkfz.de

Full_Name: Andreas Buness Version: 1.7.1 OS: Unix Submission from: (NULL) (193.174.53.122) I would like to ask you to enhance the apply function with an option drop=FALSE similar to the one existing for subsetting of arrays. Or any other mechanism to get control on the dimensionality of an object resulting from an apply call. This could facilitate more robust programming.

Dear all, I noticed that the dimnames returned by apply are different in the new release. In the following example. The returned row-names are c(?S?,?T?), but shouldn?t they be c(?X?,?Y?) as in the old release? Best, Bernd >X = array(1:8, dim=c(4,2)) >dimnames(X) = list(c("A","B","C","D"),c("S","T")) >apply(X, 1, function(x)

...tils" "datasets" "methods" "base" other attached packages: prada RColorBrewer Biobase "1.9.2" "0.2-3" "1.9.18" -- Florian Hahne Abt. Molekulare Genomanalyse (B050) Deutsches Krebsforschungszentrum (DKFZ) Im Neuenheimer Feld 580 D-69120 Heidelberg phone: 0049 6221 424764 fax: 0049 6221 422399 web: www.dkfz.de/mga

>>>>> Fischer, Bernd <b.fischer at dkfz-heidelberg.de> >>>>> on Wed, 29 Apr 2015 20:22:44 +0200 writes: > Dear all, > I noticed that the dimnames returned by apply are different in the new release. > In the following example. The returned row-names are c(?S?,?T?), but shouldn?t they be c(?X?,?...

...thematics Dept. > Merck Research Labs > 126 E. Lincoln Ave. > Rahway, NJ 07065 > 732-594-5303 Matthew, Liu first sorry for the delay in answering, but I was buried in an important project. I can offer you a solution that was actually found by one of our customers, Tobias Reber from DKFZ (German Cancer Research Center). I am appending a patch (generated by cvs diff -c ...) that I applied to R v1.6.2. Then I typed the following two commands. OBJECT_MODE=64 \ MAKE=gmake \ CC="cc -DSTDC" \ CXX="xlC" \ MAIN_LDFLAGS="-Wl,-brtl" \ SHLIB_LDFLAGS="-Wl...

...er of participants is restricted to 30 persons. For registration and submission of abstracts, please send an email message to Gunnar.Raetsch at tuebingen.mpg.de For further information, please visit the webpage at http://www.imbe.med.uni-erlangen.de/~hothorn/ensembleWS2005.html --- Axel Benner, DKFZ Heidelberg Torsten Hothorn, Universitaet Erlangen-Nuernberg Gunnar Raetsch, MPI Tuebingen

...dence interval: 0.0000000000 0.0001190186 sample estimates: common odds ratio 0 Could this be some kind of memory overflow issue since some of the values are quite high? Or am I completely off here? I would appreciate any help on this, Florian -- Florian Hahne <f.hahne at dkfz-heidelberg.de>

Full_Name: Wolfgang Huber Version: 1.5.1 OS: Windoof 2000 Submission from: (NULL) (193.174.62.11) Hi, Trying to install the binary distribution (zip file) for the "pixmap" package, as downloaded today from CRAN, I get the following warning "error -1". The package will not be installed. Installation of other packages (e.g. pinktoe, acepack) worked fine. The warning or error

Full_Name: Wolfgang Huber Version: 1.8.0 OS: Linux Submission from: (NULL) (193.174.58.146) The man page for RNGkind says that the default is Mersenne-Twister, and when I start R interactively, I get in fact > RNGkind() [1] "Mersenne-Twister" "Inversion" However, during the execution of "R CMD check" I get > > ### ** Examples > > > > RNGkind()

Hello! I'm not sure if is it a BUG or not... I'm using R 1.9.0, and I used the command below: > is.integer(9) [1] FALSE R manual contains this words about the is.integer() function: "is.integer returns TRUE or FALSE depending on whether its argument is of integer type or not." What's the problem? Am I wrong about the BUG report? Thank you very much. M?rcio de

Hi all; Is it possible to modify the "@" operator that it can handle references (or external pointers) of S4 Object instead of the real Objects? Or is there any technical or compatibility issue which make it impossible? I look forward to hear from you and also hope that you don't hate me for my nooby question. Yours sincerely, Rudolf Biczok [[alternative

Hi all, I'm working with the S4-Class system and I have a little problem with Implementing iteration functionality in my S4 class but it don't work: > setClass("foo",representation(bar="list")) > x <- new("foo",bar=list(1,2,3)) >for(e in x) cat(e) invalid type/length (S4/1) in vector allocation But when I extend from a

Has anyone running R 1.8.1 on a 64 bit system gotten negative numbers from object.size() on objects > 2GB or so? For example, on Solaris/Sparc I get > b <- numeric(131072 * 2800) > object.size(b) [1] -1358954440 I get similar behavior on the Opteron (SuSE Linux). I'm not sure if this is an R problem or something wrong with the way it was compiled on either system. I