search for: diversitree

Hi, I have reconstructed ancestral character states on a phylogeny using MuSSE in the diversitree package and plotted the character state probabilities as pie charts on the nodes. I would, however, like to colour the character states of my extant species, i.e. the tip labels, the same colours as my pie charts, such that all species in state 1 are e.g. blue, species in state 2 red and species...

...y") useDynLib(CMATRIX.so,R_matrix_multiply) I'm not sure if it's necessary, but I've also included a Makevars.in file in my src directory: PKG_CPPFLAGS=@PKG_CPPFLAGS@ PKG_CFLAGS=@PKG_CFLAGS@ PKG_LIBS=@PKG_LIBS@ ${LAPACK_LIBS} ${BLAS_LIBS} ${FLIBS} which I simply copied from the diversitree package, which seems to use a lot of fortran. I have the same problem (which I am getting to) with or without this Makevars.in file. I install my package using: R CMD INSTALL CMATRIX Then I start up R and attempt to run the following code: #Make some random matrices A = matrix(rnorm(8),4,2) B...

CRAN (and crantastic) updates this week New packages ------------ * disclapmix (0.1) Maintainer: Mikkel Meyer Andersen Author(s): Mikkel Meyer Andersen and Poul Svante Eriksen License: GPL-2 http://crantastic.org/packages/disclapmix disclapmix makes inference in a mixture of Discrete Laplace distributions using the EM algorithm. * EstSimPDMP (1.1) Maintainer: Unknown Author(s):