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Hello, I am mirroring the debian tree using rsync. I realised following bug. Version: 2.5.5-0.2 on Debian GNU/Linux. Rsync did not correct old symlinks. # ls -l debian-non-US/dists/ total 60 drwxr-xr-x 2 root root 4096 Apr 17 2001 Debian2.2r7/ drwxr-xr-x 2 root root 4096 Feb 28 2001 Debian3.0r0/ drwxr-xr-x 2 root root 4096 Nov 10 02:30 old-proposed-updates/ drwxr-xr-x 2 root root 4096 Apr 17 2001 oldstable/ drwxr...

...ed. kpathsea: Running mktexfmt pdflatex.fmt fmtutil: running `pdftex -ini -jobname=pdflatex -progname=pdflatex -translate-file=cp227.tcx *pdflatex.ini' ... This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (INITEX) restricted \write18 enabled. (/home/travis/R-bin/texlive/texmf-dist/web2c/cp227.tcx) entering extended mode (/home/travis/R-bin/texlive/texmf-dist/tex/latex/latexconfig/pdflatex.ini (/home/travis/R-bin/texlive/texmf-config/tex/generic/config/pdftexconfig.tex) (/home/travis/R-bin/texlive/texmf-dist/tex/latex/base/latex.ltx (/home/travis/R-bin/texlive/texmf-dist/tex/...

On 29 May 2018 at 16:37, R P Herrold wrote: | On Tue, 29 May 2018, Dirk Eddelbuettel wrote: | | > On a CentOS 7 machine, I am at a loss with respect to an inability to run a | > full R CMD check as anything involving tex files ends in tears. | | Hi, Dirk | | Have fun at the upcoming conference at UIC | | I seem to have 56 font packages installed under CentOS 7 | locally, but then I work

...t > fmtutil: running `pdftex -ini -jobname=pdflatex -progname=pdflatex > -translate-file=cp227.tcx *pdflatex.ini' ... > This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (INITEX) > restricted \write18 enabled. > (/home/travis/R-bin/texlive/texmf-dist/web2c/cp227.tcx) > entering extended mode > (/home/travis/R-bin/texlive/texmf-dist/tex/latex/latexconfig/pdflatex.ini > (/home/travis/R-bin/texlive/texmf-config/tex/generic/config/pdftexconfig.tex) > (/home/travis/R-bin/texlive/texmf-dist/tex/latex/base/latex.ltx &gt...

...g pdf output from LaTeX ... This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) restricted \write18 enabled. entering extended mode LaTeX2e <2011/06/27> Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, lo aded. (./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/R/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtabl...

...t PDF file produced! Output: This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) restricted \write18 enabled. entering extended mode LaTeX2e <2011/06/27> Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, lo aded. (./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) [...] (/usr/share/R/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/...

...irish, italian, kurmanji, lao, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, pol ish, portuguese, romanian, russian, sanskrit, serbian, serbianc, slovak, sloven ian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh, loaded . (/usr/local/texlive/2011/texmf-dist/tex/latex/base/book.cls Document Class: book 2007/10/19 v1.4h Standard LaTeX document class (/usr/local/texlive/2011/texmf-dist/tex/latex/base/bk10.clo)) (/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Rd.sty (/usr/local/texlive/2011/texmf-dist/tex/latex/base/ifthen.sty) (/usr/loca...

...LaTeX ... | | This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) | restricted \write18 enabled. | entering extended mode | LaTeX2e <2011/06/27> | Babel <v3.8m> and hyphenation patterns for english, dumylang, | nohyphenation, lo | aded. | (./Rd2.tex (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls | Document Class: book 2007/10/19 v1.4h Standard LaTeX document class | (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) | (/usr/share/R/texmf/tex/latex/Rd.sty | (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) | (/usr/share/texlive/texmf-dist/tex/latex/tool...

Hello all, I am trying write a fairly simple function that provide a quick way to calculate several distributions for a data set. I am trying to provide a function that has a argument that specifies which distribution is outputted (here "norm" or "cumu"). I also have a melt argument but that seems to be working fine. I have been able to get my function working well for just one dis...

...plots with mathematical expressions? In the code below, I want to replace "delta_yrsed" with what "\Delta \widehat{yrsed}" represents in TeX, but the [xyz]lab parameters of title3d appear to only accept character strings. require("rgl") fn.delta.yrsed <- function(dist, delta.dist, beta.dist=-0.1376463, beta.dist2=0.0088698) { delta.yrsed <- (beta.dist + 2*beta.dist2*dist)*delta.dist + beta.dist2*delta.dist^2 return(delta.yrsed) } plot.deeffect <- function(scolor="blue") { delta.dist <- dist <- seq(0, 16, .5...

Hi, I am new to clustering and was wondering why pvclust using "maximum" as distance measure nearly always results in p-values above 95%. I wrote an example programme which demonstrates this effect. I uploaded a PDF showing the results Here is the code which produces the PDF file: ------------------------------------------------------------------------------------- s <-...

Hi, is there a way to reference to a data object without copying it? For example I have a huge matrix called dist and I want two objects obj1 and obj2 to have a memeber dist that points to the matrix, but I don't want, for memory reasons, to copy the matrix twice. As far as I understand the following code will generate three copies of my data: dist <- some_code_that_generates_data obj1$dist <- dist...

Hello I have some strange output from R and I try to understand how R works. Could you please help me with that? temp <- rbind (c(10,1),c(99,98)) > temp [,1] [,2] [1,] 10 1 [2,] 99 98 > dist(temp) 1 2 131.6435 > sqrt(dist(temp)) 1 2 11.47360 so far so good. until the nex line: when I try to do what i did before but adding the 1/(what I did before). I was expecting a number as a result of the division but unfortunately I took the following: 1/sqrt(dist(t...

Hi, I have some data (lots of year,distance pairs), which I can straightforwardly boxplot: dists <- read.table("movedists.dat") with(dists,plot(as.factor(V1),V2)) If I want to plot these data as violin plots using vioplot, this approach doesn't work: > with(dists,vioplot(as.factor(V1),V2)) Error in Summary.factor(c...

...me to solve the Error? Thanks in advance, > ############### outputs from R console ############### > pop <- step( + ? ? ? ? ? ? lm(pop.rate ~ as.numeric(year) + as.factor(policy) + as.numeric(nation.grant) + ? ? ? ? ? ? ? ?+ as.numeric(do.grant) + as.numeric(city.grant) + as.numeric(DMZ.dist) + as.numeric(Seoul.dist), data=borderI.data, na.action = na.omit) + ? ? ? ? ? ? ) Start: ?AIC=494.27 pop.rate ~ as.numeric(year) + as.factor(policy) + as.numeric(nation.grant) + ?? ?as.numeric(do.grant) + as.numeric(city.grant) + as.numeric(DMZ.dist) + ?? ?as.numeric(Seoul.dist) ?? ? ? ? ? ? ? ? ?...

...new to R and at first I must say that it is a great program! But I have a problem with the function isoMDS from the MASS package. I have this code which I load with source() from a file: x <- c(163.59514923926784, 150.01448475257115, ...... {here are some more values}) x.sort <- sort(x) x.dist <- dist(x.sort) library(MASS) x.mds <- isoMDS(x.dist) plot(x.mds$points, type="n") text(x.mds$points, labels=as.character("x")) The problem is in the line where the isoMDS function is applied: I got the error: Fehler in isoMDS(x.dist) : zero or negative distance between...

Update SuSE Linux detection. Up to now everything with a /etc/SuSE-release file was treated as openSuSE. With this change SLES based distributions such as "SUSE Linux Enterprise Server", "SUSE Linux Enterprise Desktop" and "Novell Linux Desktop" will show up as "sles". The 'opensuse' detection was updated to handle older openSuSE releases as well as the well known SuSE Linux releases, s...

...ost -t A dc01.internal.kcs dc01.internal.kcs has address 192.168.4.5 Where do I start? Here's the output from the provisioning: sudo samba-tool domain provision --use-rfc2307 --realm=internal.kcs --domain=internal --dns-backend=BIND9_DLZ INFO 2020-09-03 14:10:26,825 pid:7623 /usr/lib/python3/dist-packages/samba/netcmd/domain.py #453: Administrator password will be set randomly! INFO 2020-09-03 14:10:26,834 pid:7623 /usr/lib/python3/dist-packages/samba/provision/__init__.py #2128: Looking up IPv4 addresses INFO 2020-09-03 14:10:26,835 pid:7623 /usr/lib/python3/dist-packages/samba/provision/_...

I would like to randomly shuffle a distance object, such as the one created by ade4{dist.binary} below. My first attempt, using sample(jc.dist) creates a shuffled vector, losing the lower triangular structure of the distance object. How can I Ishuffle the lower triangular part of a distance matrix without losing the structure? Thanks....

Reid, First, thanks for the excellent overview. This seems like it will be very useful. I have a question about dist-check. You mention that it will triple the amount of disk space I am using. I am guessing its because it does the following: > 11. runs make dist > 12. runs make clean > 13. runs make dist-clean It it necessary for dist-check to run make dist? Why would we want to make sure th...