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2003 May 22
3
How to avoid function masking
Hi All,
I've been working on updating the 'genetics' package. As a consequence of
the upgrade, .First.lib() looks like:
.First.lib <- function(libname, pkgname)
{
if (!require(combinat))
warning("Unable to load 'combinat' library. Function
`diseq.ci' will fail.")
require(gregmisc)
genotype <- get("genotype",pos="package:genetics")
}
the First.lib of the "gregmisc" package in turn does
require("MASS")
which defines a data set "genotype" which masks the "genotype...
2002 Nov 27
0
R genetics package now available
...tility functions compute genotype and allele frequencies, flag
homozygotes or heterozygotes, flag allele carriers
of certain alleles, count the number of a specific allele carried by an
individual, extract one or both alleles, estimate and generate confidence
intervals for measures of single-marker disequlibrium, and test for
departure from Hardy-Weinberg equilibrium.
The package description file and a simple example are appended below.
Comments and contributions are, of course, welcome.
-Greg
DESCRIPTION
===========
Package: genetics
Title: Population Genetics
Version: 0.6.4
Date: 2002-11-13...
2002 Nov 27
0
R genetics package now available
...tility functions compute genotype and allele frequencies, flag
homozygotes or heterozygotes, flag allele carriers
of certain alleles, count the number of a specific allele carried by an
individual, extract one or both alleles, estimate and generate confidence
intervals for measures of single-marker disequlibrium, and test for
departure from Hardy-Weinberg equilibrium.
The package description file and a simple example are appended below.
Comments and contributions are, of course, welcome.
-Greg
DESCRIPTION
===========
Package: genetics
Title: Population Genetics
Version: 0.6.4
Date: 2002-11-13...