search for: disdice

Displaying 1 result from an estimated 1 matches for "disdice".

Did you mean: dievice
2007 Mar 02
0
Dice dissimilarity output and 'phylo' function in R
...ules) library(ape) #CFI<- numeric (M) CFI <- function(ctree) { (ctree$Nnode -1)/(length(ctree$tip.label) - 2) } #calculation of dissimilarities & construction of trees# #Calc Jacc disimi# disjacc <- dissimilarity(samptest4, y=NULL,method="jaccard") #Calc Dice disimi# disdice <- dissimilarity(samptest4, y=NULL,method="dice") #Construct Jacc dendro# tjacc<- hclust(disjacc, method = "average") tjaccphylo<- as.phylo(tjacc) #Construct Dice dendro# tdice<- hclust(disdice, method = "average") tdicephylo<- as.phylo(tdice) pdf...