search for: dim1vsdim2

...library(marray) library(limma) ....... Rawdata <- read.GenePix(targets=Macro_Mono_targets,skip=107) design<- cbind(individual=c(0,0,1,1,2,2,3,3,4,4,5,5), dim1=c(1,0,1,0,1,0,1,0,1,0,1,0),dim2=c(0,1,0,1,0,1,0,1,0,1,0,1)) fit <- lmFit(normdata@maM, design) contrast.matrix<-makeContrasts(dim1vsdim2=dim2-dim1, levels=design) fit2 <- contrasts.fit(fit,contrast.matrix) fiteb <- eBayes(fit2) Toptable <- topTable(fiteb,number = 10600,genelist=maGeneTable(normdata), sort.by="P", resort.by= "M", adjust="BY") write.table(Toptable,file="RNG_Best_10000genes.t...