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Hi, hres <- hclust(smatr,method="single") hresd<-as.dendrogram(hres) as.dendrogram(hres) `dendrogram' with 2 branches and 380 members total, at height 2514.513 plot(hresd,leaflab="none") #<-error here. #the plotted dendrogram is incomplete. The x axis is not drawn. #The interested reader can download the save(hresd,file="hres.rda") #from the

Hi, I am reading a large space-delimited text file into R (41 columns and many rows) and need to do run each row's values through another R object and then write to another text file. So, far using readLines and writeLines seems to be the best bet. I've gotten the data exchange working except each row is read in as one 'chunk', meaning the row has all values between two quotes

...it possible, inside .First.lib, to find out the version number of the package that is being loaded? If only one version of the package has been installed, we could scan the DESCRIPTION file, something like .First.lib <- function(lib, pkg) { library.dynam("spatstat", pkg, lib) dfile <- system.file("DESCRIPTION", package="spatstat") ttt <- scan(dfile, what="", sep="^M", quiet=TRUE)[2] vvv <- strsplit(ttt," ")[[1]][2] cat("spatstat version number",vvv,"\n") } but even this does not seem v...

...alias 2) Contents of setdisp.ksh ############################################################# # # script: setdisp.ksh # # purpose: to set the display variable on login # ############################################################# # # Check if su, see if /tmp/ldisp for same date,time # DFILE=/tmp/ldisp if [ ${DISPLAY:-0} = "0" ] ; then cdate=`date +"%h%d%H:%M"` fdate=`ls -l $DFILE|awk '{print $6$7$8}'` if [ $cdate = $fdate ] ; then xauth add `cat $DFILE` export DISPLAY=`cat $DFILE | awk '{print $1}'` echo "" &...

Hello useRs I am trying to build a package for personal use and for making easier working with other people but I keep getting the same error message about the DESCRIPTION file not existing. when trying to install from a source tar.gz file: Error in .read_description(dfile) : file 'C:/Users/Propriétaire/AppData/Local/Temp/RtmpHFMONb/R.INSTALL647a3535/mypkg/DESCRIPTION' does not exist when trying to build a binary version: Error in .read_description(dfile) : file 'C:/Users/Propriétaire/Documents/RETROBIRD/mypkg/DESCRIPTION' does not exist In...

...alias 2) Contents of setdisp.ksh ############################################################# # # script: setdisp.ksh # # purpose: to set the display variable on login # ############################################################# # # Check if su, see if /tmp/ldisp for same date,time # DFILE=/tmp/ldisp if [ ${DISPLAY:-0} = "0" ] ; then cdate=`date +"%h%d%H:%M"` fdate=`ls -l $DFILE|awk '{print $6$7$8}'` if [ $cdate = $fdate ] ; then xauth add `cat $DFILE` export DISPLAY=`cat $DFILE | awk '{print $1}'` echo "" &...

...I would like to enquire about the existence of blank lines in the DESCRIPTION file. Testing different possibilities with tools:::.read_description suggests that starting or ending with blank lines is acceptable while blank lines in the middle of the file get caught by out <- tryCatch(read.dcf(dfile, keep.white = .keep_white_description_fields), error = function(e) stop(gettextf("file '%s' is not in valid DCF format", dfile), domain = NA, call. = FALSE)) if (nrow(out) != 1) stop("contains a blank line", call. = FALSE) and produce the erro...

Dear list, if I do smooth.spline(tmpSec, tmpT, all.knots=T) with the attached data, I get this error-message: Error in smooth.spline(tmpSec, tmpT, all.knots = T) : smoothing parameter value too small If I do smooth.spline(tmpSec[-single arbitrary number], tmpT[-single arbitrary number], all.knots=T) it works! I just don't see it. It works for hundrets other datasets, but not for

...ation from package 'epicalc': Package: epicalc Version: 2.9.1.2 Date: 2009-07-14 My code ... #------------------------------------------------ # Logistic Regression (the model result is as expected) #------------------------------------------------ dfile = 'GasketMelt1.csv' gmelt.df = read.csv(dfile, header = TRUE, as.is = TRUE) names(gmelt.df) gmelt.df$p = gmelt.df$Pass / gmelt.df$Total gmelt.glm = glm(p ~ Time + Temperature + Depth + Time*Temperature + Time*Depth + Temperature*Depth, family = binomial(link = logit), data=gmelt.df,...

Hello, I got an error if I try to install a package. For example package emg: R CMD check emg Everything is fine. R CMD INSTALL emg I got the following errors: * installing to library 'c:/R_2_13_1/library' * installing *source* package 'emg' ... Error in file_path_as_absolute(dfile) : Datei './DESCRIPTION' existiert nicht ERROR: installing package DESCRIPTION failed fo * removing 'c:/R_2_13_1/library/emg' * restoring previous 'c:/R_2_13_1/library/emg' It says, file DESCRIPTION is missing, despite it exists. The same behavoir with other packages. I w...

...t;, "ne2k_isa", "pcnet", "rtl8139", "e1000", "smc91c111", "lance" and "mcf_fec". Not all devices are supported on all targets. -net tap[,vlan=n][,name=name][,fd=h][,ifname=name] [,script=file][,downscript=dfile] Connect the host TAP network interface name to VLAN n, use the network script file to configure it and the network script dfile to deconfigure it. If name is not provided, the OS automatically provides one. fd=h can be used to specify the handle of an already opene...

...ation from package 'epicalc': Package: ? ? ? ? ? ?epicalc Version: ? ? ? ? ? ?2.9.1.2 Date: ? ? ? ? ? ? ? 2009-07-14 My code ... #------------------------------------------------ # ?Logistic Regression ? (the model result is as expected) #------------------------------------------------ dfile = 'GasketMelt1.csv' gmelt.df = read.csv(dfile, header = TRUE, as.is = TRUE) names(gmelt.df) gmelt.df$p = gmelt.df$Pass / gmelt.df$Total gmelt.glm = glm(p ~ Time + Temperature + Depth ? ? ? ? ? ? ? ? ? ? ? ?+ Time*Temperature + Time*Depth + Temperature*Depth, ? ? ? ? ? ? ? ? ? ? ? ?family...

...other YAML tools? If yes, I'll move the yaml2obj implementation (https://reviews.llvm.org/D73821 ) to include/llvm/Support/YAMLTraits.h llvm::yaml::Input so that other YAML tools can use the feature. Do people prefer a different syntax? I think [[PATTERN]] is nice because it is what FileCheck -DFILE=... uses: # CHECK: ... [[FILE]] FileCheck only preprocesses patterns in CHECK lines. D73821 preprocesses both comment lines (which include CHECK lines) and non-comment lines (which include YAML). It is not a problem that the YAML preprocessor also processes CHECK lines, because tokens...

...uot;, ? ? ? ? ? "ne2k_isa", "pcnet", "rtl8139", "e1000", "smc91c111", "lance" and "mcf_fec". ?Not all devices are ? ? ? ? ? supported on all targets. -net tap[,vlan=n][,name=name][,fd=h][,ifname=name] [,script=file][,downscript=dfile] ? ? ? ? ? Connect the host TAP network interface name to VLAN n, use the network script file to configure ? ? ? ? ? it and the network script dfile to deconfigure it. If name is not provided, the OS automatically ? ? ? ? ? provides one. fd=h can be used to specify the handle of an already opened h...

...;charactervariable"), row.names = c("1", "2"), class = "data.frame") require(foreign) ### adQuote here to (temporarily) avoid ':::' adQuote <- function (x) paste("\"", x, "\"", sep = "") dfile <- file.path(tempdir(), "test.dat") cfile <- file.path(tempdir(), "test.sas") write.foreign(d, datafile = dfile, codefile = cfile, package = "SAS7", validvarname = "V6") file.show(dfile) file.show(cfile) Sincerely, Stephen :::::::::::::...

...notated source files and return the ordered file names. (2) After all, when I put the ordered file list in front of Collade in the DESCRIPTION file, I got this error induring installation: ---------- Making package vtkr ------------ adding build stamp to DESCRIPTION Error in .read_description(dfile) : file 'DESCRIPTION' is not in valid DCF format Execution halted make[2]: *** [frontmatter] Error 1 make[1]: *** [all] Error 2 make: *** [pkg-vtkr] Error 2 *** Installation of vtkr failed *** After a bit playing with th enumber of th efiles, it seems to me Collade cannot handle (probably...

...other YAML tools? If yes, I'll move the yaml2obj implementation (https://reviews.llvm.org/D73821 ) to include/llvm/Support/YAMLTraits.h llvm::yaml::Input so that other YAML tools can use the feature. Do people prefer a different syntax? I think [[PATTERN]] is nice because it is what FileCheck -DFILE=... uses: # CHECK: ... [[FILE]] FileCheck only preprocesses patterns in CHECK lines. D73821 preprocesses both comment lines (which include CHECK lines) and non-comment lines (which include YAML). It is not a problem that the YAML preprocessor also processes CHECK lines, because tokens...

Hello, When running test-release.sh using GCC 5.4.0 we encountered this error : /home/anil/llvm1000_rc1_binary_upload/rc1/llvm-project/clang-tools-extra/clangd/Hover.cpp: In function ‘llvm::StringLiteral clang::clangd::{anonymous}::getNameForExpr(const clang::Expr*)’: /home/anil/llvm1000_rc1_binary_upload/rc1/llvm-project/clang-tools-extra/clangd/Hover.cpp:450:10: error: could not convert

...helps, > > regards > > R > > --- > > #!/bin/bash > > RETVAL=$? export JAVA_HOME=/opt/java export JDK_HOME=/opt/jdk > export FEDORA_HOME=/var/fedora export > CATALINA_HOME=$FEDORA_HOME/tomcat export JAVA_OPTS=''-Xmx512M > -Xms128M -XX:MaxPermSize=256M -Dfile.encoding=UTF-8 > -Djavax.net.ssl.trustStore=/var/fedora/server/truststo re > -Djavax.net.ssl.trustStorePassword=tomcat'' export > PATH=$JAVA_HOME/bin:$MAVEN_HOME/bin:$FEDORA_HOME/server/bin:$FEDORA_HOME/client/bin:$PATH > > > > case "$1" in > start) if [ -f...

Appologies for cross-posting Dear R users, I am using R2WinBUGS to call WinBUGS from R. After loading data, model, and initial values I call this command res <- bugs(data = dfile, inits = list(ifile), parameters.to.save = c("beta"), model.file = mfile, working.directory = tdir, n.thin = nthin, n.chains = 1, n.iter = niterations*nthin, n.burnin = 0, DIC = F, debug = T, save.history=F) which opens WinBUGS and executes the following log file: display(log) check(...