search for: designfil

Hi, I am using "*Maanova* package" to do anova. I have created *datafile* with probeID as the first column, which is a tab limited text file and also created *designfile*. I have created *readma object* which is named as abf1. >From that readma object, i have to create data object by using *createData*function and also i hav to create model object by using *makemodel* function, then i have to fit the model of anova.But, the problem is it could not find createDa...

Hi, I am using "*Maanova* package" to do anova. I have created *datafile* with probeID as the first column, which is a tab limited text file and also created *designfile*. I have created *readma object* which is named as abf1. >From that readma object, i have to create data object by using *createData*function and also i hav to create model object by using *makemodel* function, then i have to fit the model of anova.But, the problem is it could not find createDa...

Hi, Am using maanova package for doing anova.But am getting error like this..plz, help me regarding this.. > TGR=read.madata("rmaexpr.dat",designfile="design.dat") Reading one color array. Otherwise change arrayType='twoColor' then read the data again Warning messages: 1: In read.madata("rmaexpr.dat", designfile = "design.dat") : Assume that the first column is probeid. If you have probeid specify it, o...

...> todos <- read.matrix("todos_v1_e_v2_back_c.txt",sep="\t") > todos.norm <- vsn2(todos) > write.table(exprs(todos.norm),"todos.norm.txt",sep="\t") > library(maanova) > fabiana.raw <- read.madata("todos.norm.vsn2.maanova.txt", designfile="design.txt", header=TRUE, spotflag=FALSE,CloneID=1,metarow=2, metacol=3, pmt=4) > fabiana <- createData(fabiana.raw, n.rep=2, avgreps=1, log.trans=FALSE) > model.full.mix <- makeModel(data=fabiana, formula=~Var+Trat+Time+Sample+Var:Trat+Var:Time+Trat:Time+Var:Trat:Time, rand...