Displaying 1 result from an estimated 1 matches for "deseqdatasetfrommatrix".
2017 Jun 08
1
DESeq2 pairwise compasion
...ison. how to make colData and design
formula.
library("DESeq2")
countMatrix = read.table("read_count.22May.2017.new.txt",header=T,sep='\t',check.names=F)
head(countMatrix)
dim(countMatrix)
[1] 57894 35
Now I am not sure how to construct a DESeqDataSet:
dds <- DESeqDataSetFromMatrix(countData = countMatrix,
colData = colData,
design = ~ condition)
Thanks
Yogesh
--
*Yogesh Gupta*
*Postdoctoral Researcher*
*Department of Biological Science*
*Seoul National University*
*Seoul, South Korea*
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