search for: cutreedynam

...cified Place and Color columns as characters (since they are categorical variables) > dd.daisy<-daisy(myddtable, metric = "gower", stand = FALSE, type = list(character=c("Place","Color"))) Then I clustered using DIANA dd.diana<-diana(dd.daisy) I am trying to cutreeDynamic {dynamicTreeCut} as follows cutreeDynamic(dd.diana, cutHeight = 2, minClusterSize = 1, method = "hybrid",+ distM = dd.daisy,+ deepSplit = (ifelse(method=="hybrid", 1, FALSE)),+ maxCoreScatter = NULL, minGap = NULL,+ maxAbsCoreScatter = NULL, minAbsGap = NULL,+ maxDistToLabel...

...cified Place and Color columns as characters (since they are categorical variables) > dd.daisy<-daisy(myddtable, metric = "gower", stand = FALSE, type = list(character=c("Place","Color"))) Then I clustered using DIANA dd.diana<-diana(dd.daisy) I am trying to cutreeDynamic {dynamicTreeCut} as follows cutreeDynamic(dd.diana, cutHeight = 2, minClusterSize = 1, method = "hybrid",+ distM = dd.daisy,+ deepSplit = (ifelse(method=="hybrid", 1, FALSE)),+ maxCoreScatter = NULL, minGap = NULL,+ maxA...

...be producing odd results whereby it is grouping data that overlap branches. However, I'm not sure if this is because of the script I am using to visualise the data which may be incorrect. The script I tried was: > dendro<-hclust(as.dist(combo2),method="average") > cut2<-cutreeDynamicTree(dendro,maxTreeHeight=1,deepSplit=TRUE,minModuleSize=1) I then used the following to visualise the data: > cut2colour<-labels2colors(cut2) > plotDendroAndColors(dendro,cut2colour,"Dynamic Tree Cut", > dendroLabels=FALSE,hang=0.03,addGuide=TRUE,guideHang=0.05) Any advic...

Dear R-Help, I have a clustering problem with hclust that I hope someone can help me with. Consider the classic hclust example: hc <- hclust(dist(USArrests), "ave") plot(hc) I would like to cut the tree up in such a way so as to avoid small clusters, so that we get a minimum number of items in each cluster, and therefore avoid singletons. e.g. in this example, you can see

I am using the function cutreeHybrid from the package dynamic Tree Cut and I need a list of the resulting clusters but I do not know how to get it. [[alternative HTML version deleted]]

Hi everybody! Anybody knows how can I get detalied information about clusters after using hclust? The issue is that if I have some items in different clusters, I would like to get the cluster where each item is placed. Taking into account that my data set is too large, it is not useful to have the dendogram or a graphic, and really I need something like a simple table with item label and cluster