Displaying 2 results from an estimated 2 matches for "cummerbund".
2012 Apr 17
1
Cummerbund differential expression data analysis package issue
Hi all,
I'm having the same issue as in this previous post:
http://r.789695.n4.nabble.com/R-error-td4200447.html#a4209042
And as another user of Biostar:
http://www.biostars.org/post/show/42562/cummerbund-isnt-managing-cuffdiff-database/#42895
Whereby I'm trying to output cuffdiff data into cummeRbund, but it appears
to be having issues with connection to a database (below). Does anyone have
any suggestions as to how I can fix this? Thanks!
cuff_data <-
readCufflinks('/home/sbica1/t...
2011 Oct 24
2
Comparing two gff/gtf files : de novo transcripts v/s reference
Hi All
I am wondering if people based on their experience could share what methods
one could use to compare two gff/gtf files. The reason why I want to do so
is that we have constructed a RNA-Seq based transcriptome and would like to
compare it with reference transcriptome we had from in-silico approaches.
Ideally we are looking to find out
1. new genes we see
2. transcripts where the