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cuff_data
2012 Apr 17
1
Cummerbund differential expression data analysis package issue
...ppears
to be having issues with connection to a database (below). Does anyone have
any suggestions as to how I can fix this? Thanks!
cuff_data <-
readCufflinks('/home/sbica1/tophat/finaltrans/tophat/0125diff_out')
Creating database
/home/sbica1/tophat/finaltrans/tophat/0125diff_out/cuffData.db
Reading
/home/sbica1/tophat/finaltrans/tophat/0125diff_out/genes.fpkm_tracking
Checking samples table...
Populating samples table...
Writing genes table
Reshaping geneData table
Recasting
Writing gene
Data table
Reading /home/sbica1/tophat/finaltrans/tophat/0125diff_out/gene_exp.diff
Err...