Displaying 1 result from an estimated 1 matches for "csparse_valid".
2023 Aug 06
3
A demonstrated shortcoming of the R package management system
...nstalling the older Matrix, next
installs SeuratObject, and then by removing the older Matrix making the
(already installed) current Matrix version the default. This simulates a
package update for Matrix. Which, as the final snippet demonstrates, silently
breaks SeuratObject as the cached S4 method Csparse_validate is now missing.
So when SeuratObject was installed under Matrix 1.5.1, it becomes unuseable
under Matrix 1.6.0.
What this shows is that a call to update.packages() will silently corrupt an
existing installation. We understand that this was known and addressed at
CRAN by rebuilding all binary p...