search for: cox_rcallback

...now. The routine in question has to do with penalized Cox models, the C code needs to get the value of the penalty and the penalty is an arbitrary S expression passed down from top level. Terry T ---------------------------- In survival_2.36-12 (and earlier), in the function cox_callback() at cox_Rcallback.c:40: PROTECT(coxlist=eval(lang2(fexpr,data),rho)); the return value of the call to lang2() is vulnerable if allocations within eval() give rise to garbage collection. (Discovered during CXXR development.) Andrew

...nks, Geir S. gcc -shared -L/usr/local/lib -o survival.so agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart2.o agmart.o agscore.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o coxdetail.o coxfit2.o coxfit5.o coxmart.o coxph_wtest.o cox_Rcallback.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o pyears2.o pyears3.o pystep.o surv_callback.o survdiff2.o survfit2.o survfit3.o survindex2.o survindex3.o survreg2.o survreg3.o survreg4.o survreg5.o /usr/bin/ld: unrecognized option '--as-needed' /usr/bin/ld: use the --help option for usag...

...urvreg5.c -o survreg5.o gcc -shared -fPIC -Wl,-Bsymbolic -L/bi/arch/lib -L/usr/local/lib -o surv ival.sl agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart.o agmart2.o ags core.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o chinv3.o cholesky2.o c holesky3.o chsolve2.o chsolve3.o cox_Rcallback.o coxdetail.o coxfit2.o coxfit5.o coxmart.o coxph_wtest.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o pyear s2.o pyears3.o pystep.o surv_callback.o survdiff2.o survfit2.o survfit3.o survin dex2.o survindex3.o survreg2.o survreg3.o survreg4.o survreg5.o ** R ** data ** moving datasets to...

...t; > > gcc -shared -L/usr/local/lib -o survival.so agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart2.o agmart.o agscore.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o coxdetail.o coxfit2.o coxfit5.o coxmart.o coxph_wtest.o cox_Rcallback.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o pyears2.o pyears3.o pystep.o surv_callback.o survdiff2.o survfit2.o survfit3.o survindex2.o survindex3.o survreg2.o survreg3.o survreg4.o survreg5.o > /usr/bin/ld: unrecognized option '--as-needed' > /usr/bin/ld: use the --help optio...

...l,-T512 -Wl,-bnoentry -Wl,-bexpall -Wl,-bI:/SFS/user/ry/liawand/R/Rbuild/etc/R.exp -L/usr/local/lib -o survival.so agexact.o agfit2.o agfit3.o agfit5.o agfit_null.o agmart.o agmart2.o agscore.o agsurv1.o agsurv2.o agsurv3.o char_date.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o cox_Rcallback.o coxdetail.o coxfit2.o coxfit5.o coxmart.o coxph_wtest.o coxscho.o coxscore.o dmatrix.o doloop.o pyears1.o pyears2.o pyears3.o pystep.o surv_callback.o survdiff2.o survfit2.o survfit3.o survindex2.o survindex3.o survreg2.o survreg3.o survreg4.o survreg5.o -lm gmake[3]: Leaving directory `/ltmp/R...