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comresult
2004 May 26
0
Outlier identification according to Hardin & Rocke (1999)
...eterminant Estimator"
# http://bioinfo.cipic.ucdavis.edu/publications/print_pub?pub_id=736&category=1
# Drop factors first
factors <- names(x)[sapply(x,is.factor)]
if(length(factors)>0)
x <- x[-factors]
# Get the robust location/scale estimates
require(MASS)
covResult <- cov.rob(x)
# Calculate the mahalanobis distance for each datum
distance <- mahalanobis(x,covResult$center,covResult$cov)
n <- nrow(x)
p <- ncol(x)
h <- floor((n+p+1)/2)
# Asymptotic chi-square method (page 11)
# Often identifies too many points as outliers
c...