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2006 Jul 11
1
Table of P values for Fisher's exact test
...table of observed counts for various genetic markers. Instead of
doing Fisher's exact test for each marker one at a time and recording the P
value manually, is there a script to go through the whole list and generate
the P value column automatically?
An example of my data:
Counts_CHB and Counts_AA are the observed counts for one allele.
2N_CHB and 2N_AA are the total number of alleles.
gene Local_Pos 2N_CHB 2N_AA Counts_CHB Counts_AA Exact_P
B2M 2475 90 46 0 5
B2M 3532 90 44 0 1
FCN2 2203 88 46 0 1
FCN2 3536 90 46 0 9
FCN2 4027 84 46 0 9
FCN2 4036 90 46 0 9
FCN2 4318 90 46 0 9
FCN2 4392...