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Duncan Murdoch writes: > On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > > I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. > > I don't know what is causin...

...d to find that SElinux was disabled on the system. My next step will be to install a previous version of R on the system. My problem is that I am planning a shiny server installation and at least half of the apps on the current system depend on these libraries that will not install. -- W. Michael Conklin EVP Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -----Original Message----- From: Don Cohen [mailto:don-r-help at isis.cs3-inc.com] Sent: Thursday, June 22, 2017 6:18 PM To: Duncan Murdoch Cc: Conklin, Mike (GfK); Martin Maechler; r-help at r-project.org Subject: Re:...

...ples in the XML library of extracting links from pages but I cannot seem to find a way to extract the text. Any help would be greatly appreciated - I will not know the structure of the URLs I would submit in advance. Any suggestions on where to look would be greatly appreciated. Mike W. Michael Conklin Chief Methodologist MarketTools, Inc. | www.markettools.com<http://www.markettools.com> 6465 Wayzata Blvd | Suite 170 | St. Louis Park, MN 55426. PHONE: 952.417.4719 | CELL: 612.201.8978 This email and attachment(s) may contain confidential and/or proprietary information and is intended on...

...ername/tmp) Then R uses that directory for the installs. The easiest method then is to use do sudo R Sys.setev(TMPDIR="/home/myusername/tmp") install.packages(pkglist) the sudo R part just ensures I am installing into the global library and not a user specific library -- W. Michael Conklin EVP Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -----Original Message----- From: Conklin, Mike (GfK) Sent: Friday, June 23, 2017 4:38 PM To: Don Cohen; Duncan Murdoch Cc: Martin Maechler; r-help at r-project.org Subject: Re: [R] Missing dependencies in pkg installs...

...ACE -rw-r--r-- 1 root root 22407 Apr 7 11:44 NEWS drwxr-xr-x 2 root root 4096 Jun 22 22:26 R drwxr-xr-x 3 root root 8192 Jun 22 22:26 src [root at dcex1102shinypr ~]# If I CTRL-Z out of R in the first session I confirm the same result - the system shows the file as executable -- W. Michael Conklin EVP Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -----Original Message----- From: Duncan Murdoch [mailto:murdoch.duncan at gmail.com] Sent: Thursday, June 22, 2017 3:06 PM To: Conklin, Mike (GfK); Martin Maechler; David Winsemius Cc: r-help at r-project.org Subject:...

...yesterday) but I am having continuing problems with BSODs (non R related) and have in the past have had issues with R crashes and would really like a system that does not require me to remember to hit the save button on my script every 10 minutes so that I can avoid redoing everything. W. Michael Conklin Chief Methodologist Google Voice: (612) 56STATS MarketTools, Inc. | www.markettools.com 6465 Wayzata Blvd | Suite 170 |? St. Louis Park, MN 55426. ?PHONE: 952.417.4719 | CELL: 612.201.8978 ?? This email and attachment(s) may contain confidential and/or proprietary information and is intended only...

...d sh: ./configure: Permission denied ERROR: configuration failed for package 'stringi' * removing '/usr/lib64/R/library/stringi' Error in do_exit(status = status) : .install_packages() exit status 1 Error in do_exit(status = status) : .install_packages() exit status 1 -- W. Michael Conklin EVP Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -----Original Message----- From: Duncan Murdoch [mailto:murdoch.duncan at gmail.com] Sent: Thursday, June 22, 2017 11:09 AM To: Conklin, Mike (GfK); Martin Maechler; David Winsemius Cc: r-help at r-project.org Subject:...

...part namespace. Therefore, when I call my modified function it does not find the rpart specific functions and gives me an error. How can I make a new function that is a small modification of an existing package function and let the modified function access the hidden package functions? Michael Conklin Chief Methodolgist - Advanced Analytics MarketTools, Inc. 6465 Wayzata Blvd. Suite 170 Minneapolis, MN 55426 Tel: 952.417.4719 | Mobile:612.201.8978 Michael.Conklin@markettools.com <mailto:Michael.Conklin@markettools.com> MarketTools(r) http://www.markettools.com <http://w...

On 22/06/2017 3:42 PM, Conklin, Mike (GfK) wrote: > Not much progress..... I step through debug and it gets to the do.install() function which immediately errors with the same "configuration not executable" error. I believe that is a locally defined function, which means you can set a breakpoint within it but only...

On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. I don't know what is causing this bug. Perha...

...ailable for package 'viridis' * removing '/usr/lib64/R/library/viridis' ERROR: dependencies 'ggplot2', 'htmlTable', 'viridis' are not available for pacage 'Hmisc' * removing '/usr/lib64/R/library/Hmisc' Any help is appreciated. -- W. Michael Conklin Executive Vice President Marketing & Data Sciences - North America GfK | 8401 Golden Valley Road | Minneapolis | MN | 55427 mike.conklin at gfk.com<mailto:mike.conklin at gfk.com> T +1 763 417 4545 | M +1 612 567 8287 www.gfk.com<http://www.gfk.com/> [[alternative HTML version de...

> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: > > I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session...

...are in '/tmp/Rtmpxw9twb/downloaded_packages' Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning message: In install.packages("stringi") : installation of package 'stringi' had non-zero exit status -- W. Michael Conklin EVP Marketing & Data Sciences GfK T +1 763 417 4545 | M +1 612 567 8287 -----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Duncan Murdoch Sent: Thursday, June 22, 2017 8:23 AM To: Martin Maechler; David Winsemius Cc: r-help at r-project.org Subject:...

...nyone has advice. I have installed Graphviz 2.20.3 as is recommended on the Bioconductor site but basically R cannot seem to find the needed dll files. So, even though I have added the appropriate directories to the system path R cannot seem to find them. Any tips would be appreciated. W. Michael Conklin Chief Methodologist Google Voice: (612) 56STATS MarketTools, Inc. | www.markettools.com<http://www.markettools.com> 6465 Wayzata Blvd | Suite 170 | St. Louis Park, MN 55426. PHONE: 952.417.4719 | CELL: 612.201.8978 This email and attachment(s) may contain confidential and/or proprietary in...

...ut will no longer write the regular graphics. (I get a bunch of empty graphs - the graph frame but no data). So it appears that when I evaluate the expression to see if it is a trellis graph it no longer correctly evaluates at the end of the function. Any advice would be most welcome. Michael Conklin Chief Methodologist - Advanced Analytics MarketTools, Inc. 6465 Wayzata Blvd. Suite 170 Minneapolis, MN 55426 Tel: 952.417.4719 | Mobile:612.201.8978 Michael.Conklin@markettools.com <mailto:Michael.Conklin@markettools.com> MarketTools(r) http://www.markettools.com <http://...

...") Error in model.frame.default(Terms2, newdata, xlev = object$xlevels) : variable lengths differ (found for 'Price') In addition: Warning message: 'newdata' had 25 rows but variable(s) found have 43350 rows Does anyone have an idea what is going on? Best regards, Michael Conklin W. Michael Conklin Chief Methodologist MarketTools, Inc. | www.markettools.com<http://www.markettools.com> 6465 Wayzata Blvd | Suite 170 | St. Louis Park, MN 55426. PHONE: 952.417.4719 | CELL: 612.201.8978 This email and attachment(s) may contain confidential and/or proprietary informat...

On 22/06/2017 11:15 AM, Conklin, Mike (GfK) wrote: > Following Duncan's instructions I find that the system and R find that configure IS executable but if trying to install via install.packages I get the same error. > I also tried using R CMD INSTALL from the terminal and install.packages with a local file pointing to t...

>>>>> David Winsemius <dwinsemius at comcast.net> >>>>> on Wed, 21 Jun 2017 18:04:13 -0700 writes: >> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: >> >> I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it i...

...configure") to see what R sees. Duncan Murdoch On 22/06/2017 3:38 AM, Martin Maechler wrote: >>>>>> David Winsemius <dwinsemius at comcast.net> >>>>>> on Wed, 21 Jun 2017 18:04:13 -0700 writes: > > >> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: > >> > >> I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and...

...a terminal window that I have opened I get R2.71. In both cases R.home() shows the same directory /usr/lib/R. I seem to have a lot of trouble understanding where things are and how to control profile files and start up options on the Debian system. Any advice would be most appreciated. Michael Conklin [[alternative HTML version deleted]]