search for: compbio

...ance Sincerely Sergii ---------------------------------------------- Sergii Ivakhno PhD student Computational Biology Group Cancer Research UK Cambridge Research Institute Li Ka Shing Centre Robinson Way Cambridge CB2 0RE England +44 (0)1223 404293 (O) +44 (0)1223 404128 (F) http://www.compbio.group.cam.ac.uk <http://www.compbio.group.cam.ac.uk/> / This communication is from Cancer Research UK. Our website is at www.cancerresearchuk.org. We are a charity registered under number 1089464 and a company limited by guarantee registered in England & Wales under number 4325234. Our...

...l of factor x. I am not sure if this influences QR decomposition and leads to differences that I observe. I would most appreciate your help as after reading help pages I still can not understand the cause for lm vs aov discrepancy. The dataset with three factors can be downloaded from http://www.compbio.group.cam.ac.uk/Resources/Sergii_temp/example.RData Thank you, Sergii ---------------------------------------------- Sergii Ivakhno PhD student Computational Biology Group Cancer Research UK Cambridge Research Institute Li Ka Shing Centre Robinson Way Cambridge CB2 0RE England +4...

...linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 1 minor 9.0 ????? Thanks //=\ Cary Miller //=\ \=// Center for Computational Pharmacology \=// //=\ University of Colorado Health Sciences Center //=\ \=// http://compbio.uchsc.edu/Hunter_lab/Miller \=// //=\ (303) 724-0263 //=\

...NA NA NA ---------------------------------------------- Sergii Ivakhno PhD student Computational Biology Group Cancer Research UK Cambridge Research Institute Li Ka Shing Centre Robinson Way Cambridge CB2 0RE England +44 (0)1223 404293 (O) +44 (0)1223 404128 (F) http://www.compbio.group.cam.ac.uk <BLOCKED::http://www.compbio.group.cam.ac.uk/> / This communication is from Cancer Research UK. Our website is at www.cancerresearchuk.org. We are a charity registered under number 1089464 and a company limited by guarantee registered in England & Wales under number 43...

...NA NA NA ---------------------------------------------- Sergii Ivakhno PhD student Computational Biology Group Cancer Research UK Cambridge Research Institute Li Ka Shing Centre Robinson Way Cambridge CB2 0RE England +44 (0)1223 404293 (O) +44 (0)1223 404128 (F) http://www.compbio.group.cam.ac.uk <http://www.compbio.group.cam.ac.uk/> / This communication is from Cancer Research UK. Our website is at www.cancerresearchuk.org. We are a charity registered under number 1089464 and a company limited by guarantee registered in England & Wales under number 4325234. Our...

Hey Gang, Here is the situation. First of all I am a newbie, in the arena of R, so please bare with me. I am trying to make a plot with a series of plot lines that uses logs on the x axis, and when I plot it I am having a few odd things go on that I do not know how to correct. 1. the tick marks are not where I want them to be. I want them at .1, 1, 10, and 100, but I'm get them at 0.1,

Yes, I know it sounds silly, but I need to enable java support in the browsers- either IE or Firefox- that I'm running through Wine from Linux. It's because a site I want to access requires the Chime plugin, available only for Windows, but also a functional Java VM. When I run the Java SDK or JRE installers through wine, the installation gets to a certain point and then stops because

...d "wbinfo -g" give the expected results. The group information for a given user is incomplete on newsys. Here's the output from each system for one user: oldsys # id Tiger uid=10353(tiger) gid=10001(Domain Users) groups=10001(Domain Users),10008(Domain Admins),10004(Services),10012(Compbio),10016(Admin),10020(Techserv), 10023(Inkjet),10024(Sysadmin),10063(IFRpan),10048(qcall) newsys # id Tiger uid=10004(tiger) gid=10000(domain users) groups=10000(domain users) Not only is the newsys group list much shorter, but also the "Domain Users" group is a different gid and the user...

Hi All I am wondering if people based on their experience could share what methods one could use to compare two gff/gtf files. The reason why I want to do so is that we have constructed a RNA-Seq based transcriptome and would like to compare it with reference transcriptome we had from in-silico approaches. Ideally we are looking to find out 1. new genes we see 2. transcripts where the

Hello I have downloaded the spp_1.10.tar.gz and it contains compiled code. I installed the Rtools &lt;http://www.murdoch-sutherland.com/Rtools&gt; and I tried to install the package (spp_1.10.tar.gz) but it not worked bellow it is the error message. Could somebody please help me with this. Thank you * installing *source* package 'spp' ...

...tly fixed by a change in src/library/tools/R/admin.R to the 'Built' function. The 2.0.1 version appears to contain those changes. Am I missing something? --Thanks //=\ Cary Miller \=// Center for Computational Pharmacology //=\ University of Colorado Health Sciences Center \=// http://compbio.uchsc.edu/Hunter_lab/Miller //=\ (303) 724-0263

Hi all, I have a problem in that when I plot points that have a high degree of precision, some significant rounding seems to occur, resulting in uneccessary overlap of my points. Is there a way to specify the resolution or precision in plotting functions? Is there an underlying grid I have to modify somehow? Many Thanks, Jon -- Mares eat oats and does eat oats and little lambs eat ivy. A

Hi, I'm new to the list so apologies if this has been asked before. I couldn't find any refs in google. I recently installed the Vennerable library from Rforge, this required an upgrade of R to 2.10.0 by the 'pylr' dependency. However, a very simple command fails: Vcomb <- Venn(SetNames= c("EOCT", "EOCM"), Weight=c(0, 11841, 24084, 24660)) plot(Vcomb)