search for: compare_categories

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2012 Oct 11
2
In vegan package: running adonis (or similar) on a distance matrix
...pecies or OTUs, which are problematic in microbial ecology (if not outright theoretically false). What I have instead is a phylometric distance matrix between all my samples based on a phylogenetic tree. Some people have apparently made such a python implementation <http://qiime.org/scripts/compare_categories.html>, but I'd rather use R. Thanks in advance, Roey