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Full_Name: Shane Neph Version: 2.2.1 OS: mac os x Submission from: (NULL) (71.113.43.247) While I found the names of the package authors and maintainer, I was unsuccessful in finding any contact information. The preliminary documentation for heatmap.2 is inconsistent in at least a couple of places when discussing the suppression of one or more dendrograms (and column/row ordering in general).

Dear All, There might be a bug in heatmap(): x <- matrix(rnorm(10*5), 10, 5) heatmap(x, labCol=1:5) Error in axis(1, 1L:nc, labels = labCol, las = 2, line = -0.5, tick = 0, : 'at' and 'labels' lengths differ, 5 != 10 Works fine under 4.0.1. Looking at the code from 4.0.1 vs. Rdevel, esp. this part sticks out: labRow <- labRow[rowInd] %||% rownames(x) %||%

Hi. I'm trying to plot a pair of intertwined spirals and an svm that separates them. I'm having some trouble. Here's what I tried. > library(mlbench) > library(e1071) Loading required package: class > raw <- mlbench.spirals(200,2) > spiral <- data.frame(class=as.factor(raw$classes), x=raw$x[,1], y=raw$x[,2]) > m <- svm(class~., data=spiral) > plot(m,

Hola que tal alguien de ustedes me podría auxiliar, lo que pasa es que estoy tratando de hacer un programa en R utilizando la siguiente tabla: x<1 km x>1km Estabilidad a c d f c d f A 213 440.8 1.94 9.27 459.70 2.094 -9.6 B 156 106.6 1.15 3.30 108.20 1.098 2.0 C 104 61.0 0.91 0.00 61.00 0.911 0.0 D 68 33.2 0.73 -1.70 44.50 0.516 -13.0 E 51 22.8 0.68 -1.30 55.40 0.305

Hi. I'm trying to plot a pair of intertwined spirals and an svm that separates them. I'm having some trouble. Here's what I tried. > library(mlbench) > library(e1071) Loading required package: class > raw <- mlbench.spirals(200,2) > spiral <- data.frame(class=as.factor(raw$classes), x=raw$x[,1], y=raw$x[,2]) > m <- svm(class~., data=spiral) > plot(m,

Hi All, I have a matrix like m <- matrix( letters[1:10], ncol=5) How to conver it to 10 * 3 matrix, which the first col is row index of m, second col is colum index of m and third column is the value of matrix, say 1 1 1 "a" 2 1 2 "c" 1 3 "e" etc... Thanks. [[alternative HTML version deleted]]

The function heatmap() allows to specify row/column labels via the options labRow/labCol. From the code of heatmap(), I understand that when no labels are specified, the row/column labels (or indices) of the input matrix are taken as labels and re-ordered together with the rows and columns of the matrix before plotting, whereas labels supplied via labRow/labCol are plotted in the original order.

Hello again, lately I have been playing a lot with heatmap functions, in particular I complemented heatmap.2 with a nice feature from heatmap.plus, i.e. the possibility of assigning a matrix to ColSideColors so to take into account more annotations. Below is the code I introduced in heatmap.2, everything else is maintained equal to heatmap.2: if (!missing(ColSideColors)) { #if

I am having trouble displaying a dendrogram of evolutionary relationships (a phylogram imported from the ape package) as the vertical component of a heatmap, but keeping the hierarchical clustering of the horizontal component. The relationships of the vertical component in the generated heatmap are not that of the dendrogram, although the ordering is. In more detail, I am attempting to generate

Hello. I am trying to vectorize a CSR SpMV (sparse matrix vector multiplication) procedure but the LLVM loop vectorizer is not able to handle such code. I am using cland and llvm version 3.4 (on Ubuntu 12.10). I use the -fvectorize option with clang and -loop-vectorize with opt-3.4 . The CSR SpMV function is inspired from

Hi All, I've worked on some code to take a heatmap with 1000 row entries, and split this up into 20 pages, each with 50 rows from the original heatmap. I want to preserve the row order such that all 20 pages, if put together, would comprise the original heatmap. Here's what I've done: ##make the initial heatmap, with all 1000 rows and write it to an object 'heatAll'

I have written a wrapper for heatmap.2 called heatmap.w.row.and.col.clust which auto-generates breaks using breaks<-round((c(seq(from=(-20 * stddev), to=(20 * stddev))))/20, digits = 2) #(stddev in this case = 2.5) This has always worked well in the past but now I am getting an error that non-finite breaks are being generated. Drilling down, it seems that my wrapper is generating finite

Colin, I know that on Windows, when you copy and Immensely large single file, there are times when it will show something like 100 years in minutes to complete the copy. Your issue could be related to that issue with Windows. You say that you copy files over from several other systems without a problem. Are those files on the other systems single small files or are they also in

Hi Alex, I'm not aware of efforts on loop coalescing in LLVM, but probably polly can do something like this. Also, one related thought: it might be worth making it a separate pass, not a part of loop vectorizer. LLVM already has several 'utility' passes (e.g. loop rotation), which primarily aims at enabling other passes. Thanks, Michael > On Feb 15, 2016, at 6:44 AM, RCU

I'm trying to set up a new fileshare, to replace an aging NT4 machine we've been using for far too long. I'd like to run Linux (RedHat 7.3) on the machine. Basically, I'm trying to create a fileshare "files" that people can transparently log in to from NT4 and Windows 2000 workstations. My boss has approved the use of Linux for the server, but only if I can make it

Hi Alex, I think the changes you want are actually not vectorizer related. Vectorizer just uses data provided by other passes. What you probably might want is to look into routine Loop::getStartLoc() (see lib/Analysis/LoopInfo.cpp). If you find a way to improve it, patches are welcome:) Thanks, Michael > On Jun 3, 2016, at 6:13 PM, Alex Susu <alex.e.susu at gmail.com> wrote: >

Hi Alex, This has been very recently fixed by Hal. See http://reviews.llvm.org/rL270771 Adam > On Jun 4, 2016, at 3:13 AM, Alex Susu via llvm-dev <llvm-dev at lists.llvm.org> wrote: > > Hello. > Mikhail, I come back to this older thread. > I need to do a few changes to LoopVectorize.cpp. > > One of them is related to figuring out the exact C source line

Hi, I have installed samba 2.2.7 and cannot get swat to work. I have entry in /etc/services file and alo in /etc/xinetd.d/swat. I'm logging in as root/rootpassword from local or other machine. i'm getting error 401 Bad Authorization username or password incorrect What am i doing wrong??? Thanks Mohan -----Original Message----- From: samba-request@lists.samba.org

I'm trying to back-up a set of windows machines onto a single Linux machine, so that I can easily make a tape from there. The Linux Machine (RedHat 7.3, running samba 2.2.6), is set to use mount.smbfs to log in to each machine's Administrative share, and copy several files from the hard drive. One machine is giving me a great deal of difficulty, however. Our last remaining window's

I had originally written about this problem last month (http://lists.samba.org/pipermail/samba/2002-November/085418.html) Since then, our company has added another Windows Fileserver which I'm trying to back up, and they are both having the problem. Because it happens on both servers, this leads me to believe it really is a problem with my Samba server. I've upgraded to 2.2.7a, as the