search for: colind

...ell. This is similar to how NA works for the same argument names in the heatmap function. Achieving this behavior is straightforward. Assuming FALSE is the argument for suppression, the column dendrogram/reordering can be achieved by modifying heatmap.2 near line 78-80: FROM: else { colInd <- order(Colv) } TO: else if ( isTRUE(Colv) ) { colInd <- order(Colv) } else colInd <- 1:nc This does suppress the automatic column ordering/dendrogram as desired. Similar fixes for the Rowv argument are needed. R is great - keep up the work. Shane

...ck = 0, : 'at' and 'labels' lengths differ, 5 != 10 Works fine under 4.0.1. Looking at the code from 4.0.1 vs. Rdevel, esp. this part sticks out: labRow <- labRow[rowInd] %||% rownames(x) %||% (1L:nr)[rowInd] labCol <- labCol[rowInd] %||% colnames(x) %||% (1L:nc)[colInd] Maybe this should be: labCol <- labCol[colInd] %||% colnames(x) %||% (1L:nc)[colInd] > sessionInfo() R Under development (unstable) (2020-06-21 r78727) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 16.04.6 LTS Matrix products: default BLAS: /home/wviechtb/rdev/lib/li...

...t;- svm(class~., data=spiral) > plot(m, spiral) Error in -x$index : invalid argument to unary operator So we delve into e1071:::plot.svm. When I run the code in plot.svm everything is fine up until points(formula, data = data[-x$index, ], pch = dataSymbol, col = symbolPalette[colind[-x$index]]) That gives me the same error message, "Error in -x$index : invalid argument to unary operator". The weird thing is that I can run either of the those statements in isolation data[-x$index, ] symbolPalette[colind[-x$index]] and neither gives me an error. I looked in the two poi...

Hola que tal alguien de ustedes me podría auxiliar, lo que pasa es que estoy tratando de hacer un programa en R utilizando la siguiente tabla: x<1 km x>1km Estabilidad a c d f c d f A 213 440.8 1.94 9.27 459.70 2.094 -9.6 B 156 106.6 1.15 3.30 108.20 1.098 2.0 C 104 61.0 0.91 0.00 61.00 0.911 0.0 D 68 33.2 0.73 -1.70 44.50 0.516 -13.0 E 51 22.8 0.68 -1.30 55.40 0.305

...lt;- svm(class~., data=spiral) > plot(m, spiral) Error in -x$index : invalid argument to unary operator So we delve into e1071:::plot.svm. When I run the code in plot.svm everything is fine up until points(formula, data = data[-x$index, ], pch = dataSymbol, col = symbolPalette[colind[-x$index]]) That gives me the same error message, "Error in -x$index : invalid argument to unary operator". The weird thing is that I can run either of the those statements in isolation data[-x$index, ] symbolPalette[colind[-x$index]] and neither gives me an error. I looked in the two poi...

Hi All, I have a matrix like m <- matrix( letters[1:10], ncol=5) How to conver it to 10 * 3 matrix, which the first col is row index of m, second col is colum index of m and third column is the value of matrix, say 1 1 1 "a" 2 1 2 "c" 1 3 "e" etc... Thanks. [[alternative HTML version deleted]]

...are specified, the row/column labels (or indices) of the input matrix are taken as labels and re-ordered together with the rows and columns of the matrix before plotting, whereas labels supplied via labRow/labCol are plotted in the original order. Code from heatmap(), R 1.8.1: x <- x[rowInd, colInd] if (is.null(labRow)) labRow <- if (is.null(rownames(x))) (1:nr)[rowInd] else rownames(x) if (is.null(labCol)) labCol <- if (is.null(colnames(x))) (1:nc)[colInd] else colnames(x) ... axis(1, 1:nc, labels = labCol, las = 2, line = -0.5, tick = 0, cex.ax...

...(rsc)[2] - 1)/(dim(rsc)[2] - 1), colnames(RowSideColors), las = 2, tick = FALSE) } } } if (!missing(ColSideColors)) { if (!is.matrix(ColSideColors)){ par(mar = c(0.5, 0, 0, margins[2])) image(cbind(1:nc), col = ColSideColors[colInd], axes = FALSE) } else{ par(mar = c(0.5, 0, 0, margins[2])) csc = ColSideColors[colInd, ] csc.colors = matrix() csc.names = names(table(csc)) csc.i = 1 for (csc.name in csc.names) { csc.colors[csc.i] = csc.name...

I am having trouble displaying a dendrogram of evolutionary relationships (a phylogram imported from the ape package) as the vertical component of a heatmap, but keeping the hierarchical clustering of the horizontal component. The relationships of the vertical component in the generated heatmap are not that of the dendrogram, although the ordering is. In more detail, I am attempting to generate

Hello. I am trying to vectorize a CSR SpMV (sparse matrix vector multiplication) procedure but the LLVM loop vectorizer is not able to handle such code. I am using cland and llvm version 3.4 (on Ubuntu 12.10). I use the -fvectorize option with clang and -loop-vectorize with opt-3.4 . The CSR SpMV function is inspired from

...file="~/Desktop/Alfalfa-Ladak-StemV3.pdf", width=8, height=12, pointsize=4) for(i in 1:20){ selected = heatAll$rowInd[((i-1)*50):((i-1)*50+50)] ##get original row order in groups of 50 heatmap.2(combined.int.top[selected,], Rowv = FALSE, ##prevent row re-ordering Colv=heatAll$colInd, col=cm.colors(256), trace="none", margins = c(9,8), main=paste("page", i, sep=" ")) } dev.off() I can't think of why this wouldn't work, but for some reason things are completely out of order. For example, the first page of the PDF shows many...

...al(expr, envir, enclos) Browse[1]> heatmap.func.R Error during wrapup: object 'heatmap.func.R' not found Browse[1]> ls() [1] "add.expr" "breaks" "cellnote" "cexCol" [5] "cexRow" "col" "colInd" "colsep" [9] "ColSideColors" "Colv" "ddc" "ddr" [13] "dendrogram" "densadj" "denscol" "density.info" [17] "di" "distfun" &qu...

...want to setup the Windows back-up to chop that 7.1 gigs into much smaller chunks. I hope that I have been a little helpful. Good luck. Regards, Robert Adkins II IT Manager/Buyer Impel Industries, Inc. Ph. 586-254-5800 Fx. 586-254-5804 -----Original Message----- From: Colin Davis [mailto:ColinD@traininghott.com] Sent: Friday, November 22, 2002 1:06 PM To: samba@lists.samba.org; Robert Adkins Subject: [Samba] Copied file becomes infinately large I'm trying to back-up a set of windows machines onto a single Linux machine, so that I can easily make a tape from there. The Linux Mac...

...>>> Hi Alex, >>> >>> Example from the link you provided looks like this: >>> >>> |for (i=0; i<M; i++ ){ >>> z[i]=0; >>> for (ckey=row_ptr[i]; ckey<row_ptr[i+1]; ckey++) { >>> z[i] += data[ckey]*x[colind[ckey]]; >>> } >>> }| >>> >>> Is it the loop you are trying to vectorize? I don’t see any ‘if’ inside the innermost loop. >> I tried to simplify this code in the hope the loop vectorizer can take care of it better: >> I linearized... >> &...

I'm trying to set up a new fileshare, to replace an aging NT4 machine we've been using for far too long. I'd like to run Linux (RedHat 7.3) on the machine. Basically, I'm trying to create a fileshare "files" that people can transparently log in to from NT4 and Windows 2000 workstations. My boss has approved the use of Linux for the server, but only if I can make it

...;>>> Hi Alex, >>>>> >>>>> Example from the link you provided looks like this: >>>>> >>>>> |for (i=0; i<M; i++ ){ z[i]=0; for (ckey=row_ptr[i]; ckey<row_ptr[i+1]; >>>>> ckey++) { z[i] += data[ckey]*x[colind[ckey]]; } }| >>>>> >>>>> Is it the loop you are trying to vectorize? I don’t see any ‘if’ inside the >>>>> innermost loop. >>>> I tried to simplify this code in the hope the loop vectorizer can take care of it >>>> better: I line...

...;>>> Hi Alex, >>>>> >>>>> Example from the link you provided looks like this: >>>>> >>>>> |for (i=0; i<M; i++ ){ z[i]=0; for (ckey=row_ptr[i]; ckey<row_ptr[i+1]; >>>>> ckey++) { z[i] += data[ckey]*x[colind[ckey]]; } }| >>>>> >>>>> Is it the loop you are trying to vectorize? I don’t see any ‘if’ inside the >>>>> innermost loop. >>>> I tried to simplify this code in the hope the loop vectorizer can take care of it >>>> better: I line...

...Tel: 650-933-2177 http://www.sgi.com Fax: 650-932-2177 PGP Key: 0x8408D65D ====================================================================== --__--__-- Message: 12 Date: Fri, 22 Nov 2002 13:06:28 -0500 From: "Colin Davis" <ColinD@traininghott.com> To: <samba@lists.samba.org> Subject: [Samba] Copied file becomes infinately large I'm trying to back-up a set of windows machines onto a single Linux machine, so that I can easily make a tape from there. The Linux Machine (RedHat 7.3, running samba 2.2.6), is set to...

I'm trying to back-up a set of windows machines onto a single Linux machine, so that I can easily make a tape from there. The Linux Machine (RedHat 7.3, running samba 2.2.6), is set to use mount.smbfs to log in to each machine's Administrative share, and copy several files from the hard drive. One machine is giving me a great deal of difficulty, however. Our last remaining window's

I had originally written about this problem last month (http://lists.samba.org/pipermail/samba/2002-November/085418.html) Since then, our company has added another Windows Fileserver which I'm trying to back up, and they are both having the problem. Because it happens on both servers, this leads me to believe it really is a problem with my Samba server. I've upgraded to 2.2.7a, as the