search for: coinertia

...eigen values data.frame nrow ncol content 1 $tab 37 9 modified array 2 $li 37 2 row coordinates 3 $l1 37 2 row normed scores 4 $co 9 2 column coordinates 5 $c1 9 2 column normed scores other elements: cent norm I would like to do a coinertia analysis between the two results. > coinertia(op.dudi, em3.dudi) Error in paste("COCA", 1:n.axes, sep = " ") : element 2 is empty; the part of the args list of ':' being evaluated was: (1, n.axes) > coinertia(op.dudi, em3.dudi, n.axes = 2) Error in sqrt(...

Dear all community, My issue is related to the R package (made4) that permits me to calculate the RV coefficient of co-inertia. However, it is a theoretical question. And if I am not mistaken, the list Usenet groups sci.stat.consult is not currently active. Let me explain briefly: Through different microbiota datasets, I have plotted PCoA, db-RDA and sPLS-DA using 3 different types of

Hi all, I am trying to compare two distance matrices with R. I would like to create a XY plot of these matrices and do some linear regression on it. But, I am a bit new to R, so i have a few questions (I searched in the documentation with no success). The first problem is loading a distance matrix into R. This matrix is the output of a the Phylip program Protdist and lookes like this: 5

...It implements a Tcl/Tk graphical user interface (GUI) for the ade4 package. Only the most basic functions of ade4 have a GUI in this first version : classical one-table data analysis methods (PCA, COA, MCA, PCO, etc.), one table with groups of rows (BGA, WGA, DA), and two-tables analysis methods (Coinertia analysis, CCA, PCAIV). http://pbil.univ-lyon1.fr/JTHome/ade4TkGUI.jpg One of the benefits of using ade4TkGUI is the centralized graphical display of the dudi objects created by ade4. A dudi is a list with many components http://pbil.univ-lyon1.fr/ade4html/dudi.html The GUI presents a window in whi...

Hi, I would like to know if people have found the package made4 to load! I would like the .zip If you have the @ on internet to load it please give me it! Thanks a lot, Sabine --------------------------------- [[alternative HTML version deleted]]

Hi everyone, I'd like to project two pcas onto one device window. I plot my first PCA: biplot(prcomp(t(cerebdevmat)), var.axes=FALSE, cex=c(1,.1), pc.biplot=TRUE) Now I'd like to project the features of another PCA onto this graph. Any suggestions? I know this is easily done in MatLab but haven't figured it out in R. Thanks, Tanya [[alternative HTML version deleted]]

...It implements a Tcl/Tk graphical user interface (GUI) for the ade4 package. Only the most basic functions of ade4 have a GUI in this first version : classical one-table data analysis methods (PCA, COA, MCA, PCO, etc.), one table with groups of rows (BGA, WGA, DA), and two-tables analysis methods (Coinertia analysis, CCA, PCAIV). http://pbil.univ-lyon1.fr/JTHome/ade4TkGUI.jpg One of the benefits of using ade4TkGUI is the centralized graphical display of the dudi objects created by ade4. A dudi is a list with many components http://pbil.univ-lyon1.fr/ade4html/dudi.html The GUI presents a window in whi...

Dear list, I am using the plot.coinertia function from the ade4 package. Can someone tell me if it is possible to change the label size in the upper, right plot? My RV value is so high that the arrows become shorter than the labels. Thank you for your help. Oana Tomescu -- Dipl.-Ing. Oana Tomescu ACIB Core Facility Bioinformatics In...

Dear all: Subjects were measured two times (t1 and t2) on different variables (v1 ... vn). Between t1 and t2 there was an experimental manipulation. I computed two PCAs for time-points t1 and t2. Is it possible to combine both PCAs in order to get only one set of eigenvectors? Due to the experimental manipulation measurement values on time points t1 and t2 changed for each subject. Many

Hi all, Suppose I have 2 matrices A and B. And I want to measure how good each of this matrix is. So I intend to compare A and B with another "gold standard" matrix X. Meaning the more similar a matrix to X the better it is. What is the common way in R to measure matrix similarity (ie. A vs X, and B vs X) ? - Gundala Viswanath Jakarta - Indonesia

Hi, from what I understand about the canonical correlation function 'cancor', it looks for correlations in two sets of variables, each represented in matrix form. Right? Sounds exactly like what I need. I have tried the following but I am not sure how to interpret the results. AudioPCs <- c(ArTHarF0PCA$x[,2], ArTHarF1PCA$x[,2], ArTHarF2PCA$x[,2], ArTHarF3PCA$x[,2],

...lin2 1.000e+00 1.000e+00 8.667e+00 1.417e+07 residual sum-of-squares: 40.67 Number of iterations to convergence: 0 Achieved convergence tolerance: 0 --Forwarded Message Attachment-- From: pmilin at ff.uns.ac.rs To: r-help at stat.math.ethz.ch Date: Mon, 23 Aug 2010 21:33:19 +0200 Subject: [R] Coinertia randtest Hello! I dunno why, but I cannot make randtes.coinertia() from ade4 package working. I have two nice distance matrices (Euclidean): > dist1 1 2 3 4 5 6 7 2 2.5776799 3 1.7892825 1.0637487 4 1.0557991 2.4270728 2.0626604...