search for: cofactor

...he y-axis, and position along the genome on the x. (It relies on mixture regression models, since the parental contribution is unknown between markers). As a third analysis, we could use a refinement called composite interval mapping. It includes a few of the 40 mapping markers as additional cofactors in mixture regression formulae as one scans. The idea is to have cofactors to handle genetic elements with large effects while scanning elsewhere in the genome. Which markers to include as cofactors is selected prior to the scanning phase, by stepwise multiple-regression model selection (occasio...

...r helps highly appreciated. Greg library(ggplot2) p <- ggplot(a,aes(x=NO_BMI_FI_beta ,y=FI_beta ,color= Super.Pathway))+ theme_bw() +theme(panel.border=element_blank()) + geom_point(size=3) p2<-p+scale_color_manual(name="Super.Pathway", labels=c("Amino Acid", "Cofactors and Vitamins", "Carbohydrate", "Energy", "Lipid", "Peptide", "Nucleotide"), values=c("Amino Acid"="red", "Cofactors and Vitamins"="purple", "Carbohydrate"="darkgreen", "Ene...

Hello, I am hoping someone can help me with the following multivariate issue: I have a model consisting of about 50 covariates. I would like to reduce this to about 5 covariate for the reduced model by combining cofactors that are strongly correlated. Is there a package or function that would help me with this in R? I appreciate any suggestions. Thanks, Ian

I discovered recently that the phrase "Oja median" produces no hits in Jonathan Baron's very valuable R search engine. I found this surprising since I've long regarded this idea as one of the more interesting notions in the multivariate robustness literature. To begin to remedy this oversight I wrote a bivariate version and then decided that writing a general p-variate version

...anyone tell me how to I can use R to retrieve string pattern from text file. for example my file contain following information SpeciesCommon=(Human);SpeciesScientific=(Homo sapiens);ReactiveCentres=(N,C,C,C,+ H,O,C,C,C,C,O,H);BondInvolved=(C-H);EzCatDBID=(S00343);BondFormed=(O-H,O-H);Bond+ 255B);Cofactors=(Cu(II),CU,501,A,Cu(II),CU,502,A);CatalyticSwissProt=(P25006);Sp+ eciesScientific=(Achromobacter cycloclastes);SpeciesCommon=(Bacteria);ReactiveCe+ and I want to extract ?SpeciesScientific = (?)? information from this file. Problem is in 3rd line where SpeciesScientific word is divided with +....

I have 8 cofactors possibly affecting one and only one variable. I make conditional histograms: <-pdf(file="tst3.pdf",paper="special",width=36,height=36) <-histogram(~Oversized|dat$c1*dat$c2*dat$c5*dat$c6*dat$c7*dat$c8*dat$c9*dat$c10,nint=21,layout=c(32,8),data=dat,type="count")...

Hi there, I'm new to R and despite searching today, I can't find a function which will compute the adjoint of a matrix A. Does this adjoint function exist in R? Thanks in advance!

Dear help community, I'm a R-beginner and use it for my master thesis. I've got a mixed model and want to analyse it with lme. There are a lot Cofactors that coult be relevant. To extract the important ones I want to do the stepAIC, but always get an error warning. Structure of my data: data.frame': 72 obs. of 54 variables: $ Block : Factor w/ 3 levels "A","B","C": 1 1 1 1 1 1 1 1 1 1 ......

...d statistic' Table Model: gaussian, link: identity Response: sqrt Terms added sequentially (first to last) Df X2 P(>|Chi|) Tra 1 9.00e+00 0.0025 ** Mes 3 -1.37e+14 1.0000 The convectional ANOVA analysis with repeated measures give *p* values of both between groups (cofactors: *Tra* and *Mes*) and intra groups (levels of *Lugar*). When i try to fit the following model for know the wald and p values of the *Lugar*'s levels I get strangers p and wald values with summary function (A) and it’s impossible to run the anova function (B). modelo<-geeglm(sqrt~Tra+ Luga...

Hi All, (I have a degree in math, but I am too embarassed to ask my colleagues, so here goes:) I would like to get a vector normal (orthogonal) to a plane formed by two other vectors. In matlab I do this: v1 = [.4, .6, .8]; v2 = [.9, .7, .2]; nn = cross(v1,v2) (gives ~[-.48, .65, -.24] if I do R> cross(v1, v2), I get .94. Huh? Thanks for all your help, again. W

Hi! I came across R just a few days ago since I was looking for a toolbox for cox-regression. I?ve read "Cox Proportional-Hazards Regression for Survival Data Appendix to An R and S-PLUS Companion to Applied Regression" from John Fox. As described therein plotting survival-functions works well (plot(survfit(model))). But I?d like to do some manipulation with the survival-functions

Dear R-users, Attach with is my data..what i want to do is finding a suitable distribution for my data..I want to run a few test like the poisson and the exponential distribution. Please help me on how to find the p-value for poisson as well as the exponential distribution without knowing the parameter. Is it possible?? Thanks in advance. love, Anisah -------------- next

Hi Stepan, Sorry for the delay. It's great that you are working on MergeFunctions as well and I agree, we should definitely try to combine our efforts to improve MergeFunctions. Just to give you some context, the pass (with the similar function merging patch) is already being used in a production setting. From my point of view, it would be better if we focus on improving its capability

....01 1028 0 0.01 1028 closure.ll 5 28114 0 0.01 28088 0 0.01 28088 cnf.ll 222 772426 10 0.06 768498 2 0.07 767823 coarsen.ll 3 107852 0 0.02 107823 0 0.01 107823 code.ll 1 10232 0 0.01 10202 0 0.01 10202 CoderMixer2.ll 14 83683 4 0.01 81571 4 0.02 81571 CoderMixer2MT.ll 50 274089 5 0.02 266795 * * * cofactor.ll 9 103705 0 0.02 103675 0 0.02 103675 color.ll 1 2069 0 0.01 2040 0 0.01 2040 cols.ll 13 64095 0 0.02 64065 0 0.02 64065 CommandLineParser.ll 11 112348 0 0.02 112321 0 0.02 112321 command.ll 5 18344 0 0.01 18327 0 0.01 18327 comment.ll 14 39393 1 0.01 37610 0 0.01 38745 common.ll 10 113372 0 0.02...