search for: code2lazyloaddb

...think that this might be a better forum to ask my question. I have recently updated one of my packages, and then tried to build it using R-devel, but I get the following error message: ################ -----snip---- Loading required package: lattice Loading required package: RColorBrewer Error in code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, : name space must not be loaded. Calls: <Anonymous> -> code2LazyLoadDB Execution halted ERROR: lazy loading failed for package 'ppiStats' > sessionInfo() R version 2.7.0 Under development (unstable) (2008-02-10 r44415)...

I'm trying to compile R 2.10.1 on AIX 5.3, and am getting the following error: Error in read.dcf(file = descfile) : Line starting 'Package: tools ...' is malformed! Calls: makeLazyLoading ... code2LazyLoadDB -> loadNamespace -> parseNamespaceFile -> read.dcf Execution halted make[3]: *** [all] Error 1 make[3]: Leaving directory `/afs/.isis.unc.edu/pkg/r-2.10.1/.build/rs_aix53/R-patched/src/library/tools ' My environment and configure settings are as follows: export PATH=/usr/local/bin:...

...age March18 for lazy loading Loading required package: rcom Loading required package: RODBC Loading required package: RColorBrewer Loading required package: survival Loading required package: splines Error in parse(n = -1, file = file) : invalid \uxxxx sequence Calls: <Anonymous> -> code2LazyLoadDB -> sys.source -> parse Execution halted make: *** [lazyload] Error 1 *** Installation of March18 failed *** Removing 'C:/DOCUME~1/CHARLE~1/LOCALS~1/Temp/Rinst142800030/March18' While I can clearly read that the problem is invalid \uxxxx sequence I don't know what it...

...ackage: zoo Attaching package: 'zoo' The following object(s) are masked from package:base : as.Date.numeric Error in parse(n = -1, file = file) : unexpected end of input at 63: ft=winsorised.left, winsorised.right=winsorised.right) 64: } Calls: <Anonymous> -> code2LazyLoadDB -> sys.source -> parse Execution halted ERROR: lazy loading failed for package 'ansecon' ** Removing '/Users/ajayshah/L/R/packages/ansecon.Rcheck/ansecon' -- Ajay Shah http://www.mayin.org/ajayshah ajayshah at mayin.org...

...Removing '/home/user/R/x86_64-pc-linux-gnu-library/2.8/RCurl' * Installing *source* package 'biomaRt' ... ** R ** inst ** preparing package for lazy loading Error in loadNamespace(i, c(lib.loc, .libPaths())) : there is no package called 'RCurl' Calls: <Anonymous> ... code2LazyLoadDB -> loadNamespace -> namespaceImport -> loadNamespace Execution halted ERROR: lazy loading failed for package 'biomaRt' ** Removing '/home/user/R/x86_64-pc-linux-gnu-library/2.8/biomaRt' The downloaded packages are in /tmp/RtmpzdpweV/downloaded_packages Warning messages...

...can be installed ... ERROR Installation failed. The error file says: * Installing *source* package 'TDC' ... ** R ** preparing package for lazy loading Error in parse(n = -1, file = file) : unexpected '<' at 102: `.__C__BindArgs` <- 103: < Calls: <Anonymous> -> code2LazyLoadDB -> sys.source -> parse Execution halted ERROR: lazy loading failed for package 'TDC' ** Removing '/home/mariepierre/Packages/PermAlgo/PermAlgo/PermAlgo2/TDC.Rcheck/TDC' The problem is with my classes and methods. The respective files contain: setClass("BindArgs",...

...ma = 1.8, white = "D65", name = "Apple RGB") 6: eval(expr, envir, enclos) 7: eval(i, envir) 8: sys.source(codeFile, env, keep.source = keep.source) 9: try(sys.source(codeFile, env, keep.source = keep.source)) 10: loadNamespace(package, lib.loc, keep.source, TRUE, TRUE) 11: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, compress = compress) 12: tools:::makeLazyLoading("grDevices") aborting ... /bin/sh: 18508 Memory fault(coredump) make[3]: *** [all] Error 139 make[3]: Leaving directory `/contrib/R-2.4.0/src/library/grDevices' make[2]: *** [R]...

...#39; for details. *4.* the log file contains: * Installing *source* package 'remora' ... ** R ** data ** preparing package for lazy loading Error in parse(n = -1, file = file) : unexpected '<' at 745: `.__C__remoraConfiguration` <- 746: < Calls: <Anonymous> -> code2LazyLoadDB -> sys.source -> parse Execution halted ERROR: lazy loading failed for package 'remora' ** Removing '/home/fmm/thesis/R/src/remora.Rcheck/remora' fmm@Darkmaster:~/thesis/R/src$ grep -i __C__remoraConfiguration * fmm@Darkmaster:~/thesis/R/src$ grep -i __C__remoraConfiguration *...

I'm trying to compile R 2.10.1 on AIX, and getting the following errors when it is trying to build the tools package: Error in read.dcf(file = descfile) : Line starting 'Package: tools ...' is malformed! Calls: makeLazyLoading ... code2LazyLoadDB -> loadNamespace -> parseNamespaceFile -> read.dcf Execution halted make: *** [all] Error 1 My environment and configure settings look like this: export PATH=/usr/local/bin:/opt/freeware/bin:$PATH export OBJECT_MODE=64 export LIBICONV=/opt/freeware export CC="xlc_r -q64&q...

...amma = 1.8, white = "D65", name = "Apple RGB") 8: eval(expr, envir, enclos) 9: eval(i, envir) 10: sys.source(codeFile, env, keep.source = keep.source) 11: try(sys.source(codeFile, env, keep.source = keep.source)) 12: loadNamespace(package, lib.loc, keep.source, TRUE, TRUE) 13: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, compress = compress) 14: tools:::makeLazyLoading("grDevices") aborting ... make[3]: *** [all] Segmentation fault (core dumped) make[3]: Leaving directory `/home/source/R-2.4.0/src/library/grDevices' make[2]: *** [R] Error 1 m...

...ibrary/compiler' byte-compiling package 'compiler' Warning in file(datafile, "wb") : cannot open file '/usr/lib64/R/library/compiler/R/compiler.rdb': Permission denied Error in file(datafile, "wb") : cannot open the connection Calls: <Anonymous> -> code2LazyLoadDB -> makeLazyLoadDB -> close -> file Execution halted make[4]: *** [../../../library/compiler/R/compiler.rdb] Error 1 make[4]: Leaving directory `/tmp/BUILD/R-2.15.0/src/library/compiler' make[3]: *** [all] Error 2 make[3]: Leaving directory `/tmp/BUILD/R-2.15.0/src/library/compiler'...

...to load R code in package 'Hmisc' Error: unable to load R code in package 'Hmisc' Error: unable to load R code in package 'Hmisc' Execution halted ** Removing '/home/dupontct/Hmisc.Rcheck/Hmisc' On further exploration I found that the problem resides in the tools:::code2LazyLoadDB function. The call to sys.source falls into an infinite loop when it tries to evaluate the line "library(Hmisc)" from the test.R file.

...a = 1. 8, white = "D65", name = "Apple RGB") 8: eval(expr, envir, enclos) 9: eval(i, envir) 10: sys.source(codeFile, env, keep.source = keep.source) 11: try(sys.source(codeFile, env, keep.source = keep.source)) 12: loadNamespace(package, lib.loc, keep.source, TRUE, TRUE) 13: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, compress = compre ss) 14: tools:::makeLazyLoading("grDevices") aborting ... make: 1254-059 The signal code from the last command is 11. Stop. make: 1254-004 The error code from the last command is 1. ----- Is this a known prob...

...library/tools/src' make[5]: Leaving directory `/rnd/homes/tmp/R-2.10.1/src/library/tools/src' make[4]: Leaving directory `/rnd/homes/tmp/R-2.10.1/src/library/tools' Error in read.dcf(file = descfile) : Line starting 'Package: tools ...' is malformed! Calls: makeLazyLoading ... code2LazyLoadDB -> loadNamespace -> parseNamespaceFile -> read.dcf Execution halted make[3]: *** [all] Error 1 make[3]: Leaving directory `/rnd/homes/tmp/R-2.10.1/src/library/tools' make[2]: *** [R] Error 1 make[2]: Leaving directory `/rnd/homes/tmp/R-2.10.1/src/library' make[1]: *** [R] Error 1 m...

...al = TRUE) 14: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 15: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE)) 16: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir) 17: tools:::makeLazyLoading("grDevices") An irrecoverable exception occurred. R is aborting now ... make[4]: *** [../../../share/make/lazyc...

...= TRUE) 14: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 15: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE)) 16: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir) 17: tools:::makeLazyLoading("grDevices") An irrecoverable exception occurred. R is aborting now ... make[4]: *** [../../../share/make/la...

On 2016-01-01 23:48, peter dalgaard wrote: > Nice catch you two!!! > > Happy New Year > -pd I am much happier with this great start! Simon - which compiler)s) did you use: xlc and xlfortran, or gcc/gfortran? I have made some changes to configure(.ac) so maybe my problems are self-inflicted. But would be good to know what environment you are using. Thanks for looking - and